Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01891 ATGTACAATACATGCAATTACGAATCTACCCTTGATCACTCTGAGGAAGATTTAGAATGTGCTGTGTGTCTTTGTAAAATAGAAGATGAAGATGAGATTAAAGTATTGAGGTGTAACCATATGTATCACAAACATTGTTTGGATAAATGGATTGGTTTCAAAAACCATACTTGTCCTCTTTGTAGAGAATCATTGAGACCAAAAAATGTTATCACTGAGCTTGGTGTTGAAGTTATTTCATTTAATTTTTGTGCCATTCGTAGATATCGATATTGTATTGATTGCCTCTGGTTGTTGTTGGAGTCTATTGTTGGAGTCGTTGATTCTGCAGATTCGGTGGTGGTTGGTGCTATTTGTAGTGGGGTTTTGGTTTTTATTAGTGTTTGTTGTTTGTTGAAAGCTCAAGTGTTGGTTGCTGTCTTACTTAGTGTTGAGTTTGCTGGTTTGCATGCTGGTGGTGAGATGCACCGAAAATGTTTGGCAGTTGTGGGTTCTGCGCGTTTATGGTGCTGTGGTGTTTGGTTTTTTGCCCCTGGTTTCTTGCATTTGTGA 552 0.3822 MYNTCNYESTLDHSEEDLECAVCLCKIEDEDEIKVLRCNHMYHKHCLDKWIGFKNHTCPLCRESLRPKNVITELGVEVISFNFCAIRRYRYCIDCLWLLLESIVGVVDSADSVVVGAICSGVLVFISVCCLLKAQVLVAVLLSVEFAGLHAGGEMHRKCLAVVGSARLWCCGVWFFAPGFLHL 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01891 183 SMART ring_2 20 61 IPR001841 -
Trre1g01891 183 ProSiteProfiles Zinc finger RING-type profile. 20 62 IPR001841 -
Trre1g01891 183 PANTHER - 5 69 IPR044249 -
Trre1g01891 183 SUPERFAMILY RING/U-box 14 68 - -
Trre1g01891 183 Pfam Ring finger domain 19 62 IPR001841 -
Trre1g01891 183 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 4 75 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01891 Trre-Chr1 15144807 15152624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01891 13 65 C3H Transcription Factor Family AT2G04240 50.943 6.48e-14 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01891 K16282 - mof:131153263 110.153