Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01888 ATGAAGAACTCTGCTTCGGATCATGGTTTGTTCATCGAGAGCGATGATGAAGAAGAAAAGGATTTAGGAAGATATCAGAATGATGGAAATGAATCAGACTTTTCAAATGACTCTCATGATAATTTAGACCAAAGAAAGCCAAGTTCCTACAGCATGGCATGGCCTCAAAGTTACAGGCAATCCATTGATCTGTATGGTAGCGTGCCATCGCCAAATATCGGATTTCTTGGCACAACATCACTGACAAGATTAGGCAGTTCTTTTCTTGGTTCGACATTGACAAGGAGGCACACTGCTGAAACTATACCACCTATCAAAAAGCCTCTGATACAACCGACAGTGGACGAAGAGCAGCAGCAGGATAGCTCTCAGACATTTCTTCCTCCCCTCCCATCTAGGAAGTCTTCAATTAGGAAATCTTCAAAGATTTCTCATGAAGTTCATATTCCTGGCCAATGCTCTTTTGGACAAGCTGTCCTTAATGGTATGAATGCCCTTTGTGGTGTTGGAATCCTTTCAACCCCTTATGCTCTTAATGAAGGTGGATGGGCTGCACTTGGAATCTTGCTGCTATTTGCAGCACTTTCCTTTTATACTGGATTGCTGTTGCGGTATTGCTTAGATAGCGAACCTGGTCTGGAAACTTATCCCGACATTGGTCAAGCAGCTTTTGGTACTCTTGGACGGGTCGTCATTTCTATAATATTATACATGGAATTATATGCTTGCTGCATTGAATACATCATTCTAGAGAGTGACAATCTATCGTCCTTATTTCCGGATGCAAGCTTAACTTTGGGTGGATTTAAATTGAATGCGCACATTCTATTTGCAATCTTGGCCACATTGGCTATTCTTCCCACCGTTTGGCTCCGGGACCTTCGCATACTAAGTTACATATCAGGATGCGGAGTCATTGCAACGGCTGTTGTGGTTCTGTGTTTGGTGTGGGTTGGCGTGGTAGACGATACTCCGCTTAGTACAAAAGGAACAACAACACTTAAACTTTCAACATTCCCTGTTGCTATGGGTCTATGCGGTTACTGCTTCTCCGGACATGCTGTGTTCCCCAACCTATATTCCGCTATGGCTAATCGAAATCAATTCCCTGCAGTACTCTTGACATGTTTTGCAATTTGCACATCAATGTATTGTTTTGTAGCTGTTTTGGGATACTTAATGTTTGGAGAAGATACAAAATCTCAATATACTCTTAACATGCCTCGAGAATATATAGCCTACAACATCGCTGTGTGGACTACGGTCGTTAATCCGCTTACCAAATATCCTTTATAA 1296 0.4213 MKNSASDHGLFIESDDEEEKDLGRYQNDGNESDFSNDSHDNLDQRKPSSYSMAWPQSYRQSIDLYGSVPSPNIGFLGTTSLTRLGSSFLGSTLTRRHTAETIPPIKKPLIQPTVDEEQQQDSSQTFLPPLPSRKSSIRKSSKISHEVHIPGQCSFGQAVLNGMNALCGVGILSTPYALNEGGWAALGILLLFAALSFYTGLLLRYCLDSEPGLETYPDIGQAAFGTLGRVVISIILYMELYACCIEYIILESDNLSSLFPDASLTLGGFKLNAHILFAILATLAILPTVWLRDLRILSYISGCGVIATAVVVLCLVWVGVVDDTPLSTKGTTTLKLSTFPVAMGLCGYCFSGHAVFPNLYSAMANRNQFPAVLLTCFAICTSMYCFVAVLGYLMFGEDTKSQYTLNMPREYIAYNIAVWTTVVNPLTKYPL 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01888 431 PANTHER OS05G0424000 PROTEIN-RELATED 161 423 - -
Trre1g01888 431 Pfam Transmembrane amino acid transporter protein 153 431 IPR013057 -
Trre1g01888 431 MobiDBLite consensus disorder prediction 9 44 - -
Trre1g01888 431 MobiDBLite consensus disorder prediction 1 49 - -
Trre1g01888 431 MobiDBLite consensus disorder prediction 114 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01888 Trre-Chr1 15128444 15131723 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01888 1 431 Amino Acid or Auxin Permease AAAP Family AT2G39130 63.242 0.0 570
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01888 K15015 - gmx:100781123 600.512