Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01884 ATGGAAATTCTAACTTCTCTTGTTGGAAACCTAGTAGATTATACTGTTGCGCCTATTGGACGTCAAGCAAGTTTCTTGATATTCTACAAAGGCAATTTTAAGATGCTAGCGGATCATGTCAAAGACCTCCAGGCTGCAAAAGAAAGAGTGCTTCATTTGGTTGAAGAAGAAAGGGGAAATGGTAAAGAAATCGAAAGAGATGTGGCGAATTGGTTGGAGAAAGTGGACGAGCTGATTGAAACAGCAAATCAGCTTCAACAAGATCCTCGTCGTGCCAATGTCAGGTGCTCAACATGGGGGTTCCCCAATTTGATTTTGCGTCATCAACTAAGTAGGAAAGCCAAAAAAATTGCAAATGATGTTGTCCAAGTTCAAGGCAAAGGGACGTTTGATCGAGTTGGTTACGCTCCAGCCCTAGATAGAGTAGCCTCCTCTTTCTCAATAAGAGGTGGTGAAATGTATGAGACAAGGGAGTCACTTAAGGAGAAAATTGTGAAGGCTTTATCAAACCCCAATTCACGCAACATTGGGATCTATGGATTGGGTGGTGTGGGTAAGACCACTTTGGTGGAAGAAGTTAAACAAATAGCAAAGCAACTTAAATTGTTCGATAAAGTGGTTATGACACATGTATCTCAAAATCCAGACTTTAAAACCATTCAAGGGGAGATTGCAGATTTGTTGGGTTTGCGTTTCGACGAGGAGACAATTTTTGGAAGAGCAAATCGCCTGAGACAAAGAATCAAGATGGAGAAAAGTATCCTTGTCATTCTAGACAATATATGGAGCATGCTTGATTTGAAGAAAGTGGGAATCCCAATTGGTAATGAACATAATGGTTGCAAACTATTAATGACAAGTAGAAATCAAGATGTGTTGCTGCAAATGGATGTTCCAATGGATTTCACTTTCAAACTTGAGCTTATGAGTGAAAATGAGACATGGAAGTTGTTTCAATTTATGGCTGGAGATGTGGTTAAAGATAGAAATTTGAATGATGTAGCAATTCAAGTTGCCCAAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACGGTGGCACGTGCAATGAGAAATAAGAGAGACATTCAGTCTTGGAAAGAGGCGTTAAGGAAATTACAATGTAATGATCATACAGAGATGGACGCGTTAACTTATTCTGCTTTGGAATTGAGTTACAACTCATTGGAGAGTGATGAAATGAGGGATCTCTTCTTGCTTTTTGCAGTAATAGAACGTGAAGAAGTAGAGTACTTTCTGAAAGTTGCAATGGGTTTGAATATATTAAAGAATGTTAATAGCATGGATGAGGCTAGAAACAAACTTTACACAATAATCAGATCTTTGGAGGTGACTTGTCTTCTGCTTGATGTTGAAACAGGTGGGAATATTTCAATGCATGATTTTGTTCGTGAGTTTGCTACCTCCATAGCACGTAGGGACAAACATGTATTGCTAAGAAAACAATCAGATGAGGAATGGCCATCCAATGATTTTTTAAATAGGTGCATGCAGATTGTTCTACCATTGGTTGAATTGGGTCATATCCACGATCTTCCTCAAACGATTGGTTGTCCAAACATTAAGTTGTTCTATTTGGCTTGTGAGAACCTATCTTTAAAGATCCCTGATACTTTTTTTGAGGGGATGGCCAGCCTTAGAGTGCTAGATTTAACACATCTGAACTTGTCTTCATTACCCTTCTCATTTCGGTTCCTAACTGACCTTAAAACGTTGTGTTTGAATTTCTGCATTTTGGAAAATATGGATGCAATAGAAGGTTTGAAAAATTTACAAATTCTTAGCCTCGCATATTCTTCAATGATCAAGTTCCCAAGTGAAATAGGGAAATTGACTCAATTGAGAATGCTTGATTTGAGCAACTCAGGAATTGAAGTACTCCCATCCAACATCATATCAAATTTGATTAAATTGGAGGAGTTGTACATGGGCAATACCTCTATTAATTGGGAAGATGTGAATTCAACGGTTCAAAATGGAAATGCTAGCATTGCTGAGCTTCAGAATCTACCCAAGTTGACTGCCCTAGAATTACAAATTCGAGAGACTTGGATGTTACCAAGGGACATGCAATTGATGTTTGAGAAGCTTAATTTTTTTAAAATTGCTATCGGAAATGTATGGGAATGGGCAGACATTGAAGATGGAACCTTAAAAACATTGATGCTCAAACTTGGTACCAACATACTTTTGGAGCACGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTACTTGGATGATGTTGATGGAATTCAAAATGTGCTTTATCAGCTAAATGGGCAAGGATTTCCATTGCTGAAACATCTTCACGTCCAAAATAATCCAAACATGAAGCACATTGTTGACTCGAAAGAGAGAAATCAAATCCATGTGTCCTTTCCCATCTTGGAAACACTAATACTTCACAATCTTAAAAACTTGGAGCATATATGTCATGGTCCACTTTCAATGACTTCTTTTGGAAGTCTTAGTGTTATCAAAGTCAAAAATTGTGTCCAATTAAAGTATCTTTTCTCCTATACATTGGTTAAAGAACTTTCCCACCTTTCAGAAATTGAAGTCTTCCACTGCAATTCTATGACGAAGATTGTGCTCAAAGACAACAATTCAAGTGCAAATAATGATATAGATAATGAAAAAATTGATTTTCTTCTATTGCGTTCTTTGACTTTAGAACATTTGGAGACAATTGATGATTTCTTCTCTTATCATTCGACGAATTCCAGAAGTAAGCAAAAATATCATGGTTTAGAGCCTACTGTTTCTGCCCCATTTTTCAATGATCAGGTTGCATTTCCTAAATTGGATACCCTCAAATTGAGTTCACTCCTCAATTTGAATAAAGTTTGGGATGACAATTATGATTCAATGTACAACTTGACTACCTTGATTGTGGATAATTGTGGCGGGTTGAAGTACTTATTCTCATCTACCGTGGTTGGAACTTTTAAGAACCTCAAACACCTTGAAATAAGTAATTGTGCAATGATGGAGGAGATTATAGCTAAAGAAGAAGGAAGAGGTGCATCAGAGGAAGAGATTCAGTTTTGCAAATTAGAGAAAATCATATTGAAGGACATGGACAACTTGAAGACAATATGGCACCGCCAATTTGAAACATTGAAGAAGTTGCAAGTGAACAATTGTAATAAAATTGTGGCGGTTTTTCCCTCTTCGATGCAAAAAACATATAATAAGCTAGAGATTTTGGAGGTTACAAATTGTGGTTTAGTGGAAGAAATATTTGAATTGAGCTTCAATGGAAGTAGCAGTGTAGAAGATACAACACATTTGAAAGAATTTACTATAGATGGATTGGACAATCTGAAAAAGATATGGAGTAGGGATCCATATGGAATTCTTAGTTTTCAAAATCTAATAAATATAAAAGTAAAAAGTTGTGAGAGTTTGGAGTATCTATTACCACTTTCCGTAGCCACTCATTGCTCACATCTCAAGGAACTTCATATAATACATTGTGGAAACATGAAGGAAATTGTTGCAGAGGAGAAAGAATCTAGCATGAATGCAGCTCCCATATTTGAGTTTAATCAACTGTGTTATTTATTGCTTTGGAACTTACATAGACTCAAGGGTTTCTCTGCTAAAAAACATACCCTAGCATGTCCATATTTGAAGATAATTGATGTTGTCAATTGTCCAAACTTGAGTTTGTACAGAACTCTATCTACAAGAAGAAGATCCAATACTGAAGATGACAAACACTCTGTTTCAACGCAACAACCACTTTTCATTGTCGAACAGGTGATTCCAAATTTAGAGAAGTTGAGAATATGTCATAAGGAAGCTAACGTGATAATGCAAGCCCAAAACTCAAATGGCCTATTCACAAAAATGACAATTCTTGGTTTGTCTGGTTATAAGGATGAAGATACATTTCCTTATTGGTTTCTTCAAAATGTGCGTGGTCTTGAAATACTAGTTATTGAACACAGTTGCTTCAAGAAGATATTTCAAGATGAAGGAAGGATGAGTGAGAAGACTCACACACGAATCAAATGGTTGACATTGAGTGATTTACCTAACCTTGAACATATATGTGAGGATGGATTTCGAATTGACCCAGTTCTTGAGTTCCTTGAACACTTACGGGTTGACAGTTGTCCTAGTCTGATAAATTTGCTGCCTTCCTCAGTCACCTTTACTCATTTGGTACAGTTAGAGATAAAAGATTGCAATGGGCTAACAAAATTAATTACATCTTCTACCGCACAAAGTTTGATCAACCTCACAACACTAAAGATAGAAGCCTGTAATTCACTTGAAGAGGTAATTCTTGGAGAGGAAAATGTTCACATTACATTTATTAGTTTAGAAATATTGATTTTGGTATCTTTGCCTAGCCTCAACAAATTTTGCTCTAGTAAGTGCTTCTTCAAATTTCCATTGTTAGAGGCAGTAATTGTAAGAGAATGTCCTCGCATGAAGGTTTTTTCTGAAGGATACACAAGTACACCAGGTCTTCGGAAAGTTGAAATTGCAGAAACCCATGAAGAATGGTTTTGGAAAGGAAACCTAAATGATACAATAAACAACATGTTTGAAGATAAGGTTGCATTTGGTAAATTCAAATATTTGGCCTTATCAGACTACCCTGAGATGAAGGATTTGTGGTATGGTCAACTTGATCATCAAAATGTATTTTGCAATTTGAAACATCTAGTGGTGAACAGATGTGATTTTTTATCACATGTACTTTTTCCATCAAATGTAATGCAAGTGCTATATGGATTGGAAGAACTAGAAGTAACAGATTGTGATTCATTAGAAGAAGTGTTTGATGTGAAAGGTATGAAGTCTAAAGACACATTGATAAAACAAAGCACTCAATTGAAAAAATTGACTTTGTCTAAGTTACCAAAATTGAAGCACATATGGAATGAGGATCCTCATGATATTATAAACTTTGGAAACTTATGCACGGTGGATGTTTCTGAGTGTCAAAGTTTGTTATATATATTTCCATTGTCATTGTGTGAAGATCTTGGACATCTTGAAATGCTTGTGATAGAGTCTTGCGAAGTTGAGCAAATTGTAGCAATGGAAGAAGGACCAATAAAAACCAATTTTAATTTTCCCCAATTGAAAATTATGCAACTGCTTCGTTTGACAAATCTTAAGAGTTTCTATCAAGGAAAGTATATTTTAGAGTGCCCTTCATTGAAGACTTTGAATGTATATCGTTGTGAAGCATTAAGAATGTTTTCCTTCGGCGAAGCTCTGTTTCAACAAGCTCTGTTTTCTATTGACAAGGTAAATTAA 5307 0.3616 MEILTSLVGNLVDYTVAPIGRQASFLIFYKGNFKMLADHVKDLQAAKERVLHLVEEERGNGKEIERDVANWLEKVDELIETANQLQQDPRRANVRCSTWGFPNLILRHQLSRKAKKIANDVVQVQGKGTFDRVGYAPALDRVASSFSIRGGEMYETRESLKEKIVKALSNPNSRNIGIYGLGGVGKTTLVEEVKQIAKQLKLFDKVVMTHVSQNPDFKTIQGEIADLLGLRFDEETIFGRANRLRQRIKMEKSILVILDNIWSMLDLKKVGIPIGNEHNGCKLLMTSRNQDVLLQMDVPMDFTFKLELMSENETWKLFQFMAGDVVKDRNLNDVAIQVAQKCEGLPLRVVTVARAMRNKRDIQSWKEALRKLQCNDHTEMDALTYSALELSYNSLESDEMRDLFLLFAVIEREEVEYFLKVAMGLNILKNVNSMDEARNKLYTIIRSLEVTCLLLDVETGGNISMHDFVREFATSIARRDKHVLLRKQSDEEWPSNDFLNRCMQIVLPLVELGHIHDLPQTIGCPNIKLFYLACENLSLKIPDTFFEGMASLRVLDLTHLNLSSLPFSFRFLTDLKTLCLNFCILENMDAIEGLKNLQILSLAYSSMIKFPSEIGKLTQLRMLDLSNSGIEVLPSNIISNLIKLEELYMGNTSINWEDVNSTVQNGNASIAELQNLPKLTALELQIRETWMLPRDMQLMFEKLNFFKIAIGNVWEWADIEDGTLKTLMLKLGTNILLEHGIKALIKGVENLYLDDVDGIQNVLYQLNGQGFPLLKHLHVQNNPNMKHIVDSKERNQIHVSFPILETLILHNLKNLEHICHGPLSMTSFGSLSVIKVKNCVQLKYLFSYTLVKELSHLSEIEVFHCNSMTKIVLKDNNSSANNDIDNEKIDFLLLRSLTLEHLETIDDFFSYHSTNSRSKQKYHGLEPTVSAPFFNDQVAFPKLDTLKLSSLLNLNKVWDDNYDSMYNLTTLIVDNCGGLKYLFSSTVVGTFKNLKHLEISNCAMMEEIIAKEEGRGASEEEIQFCKLEKIILKDMDNLKTIWHRQFETLKKLQVNNCNKIVAVFPSSMQKTYNKLEILEVTNCGLVEEIFELSFNGSSSVEDTTHLKEFTIDGLDNLKKIWSRDPYGILSFQNLINIKVKSCESLEYLLPLSVATHCSHLKELHIIHCGNMKEIVAEEKESSMNAAPIFEFNQLCYLLLWNLHRLKGFSAKKHTLACPYLKIIDVVNCPNLSLYRTLSTRRRSNTEDDKHSVSTQQPLFIVEQVIPNLEKLRICHKEANVIMQAQNSNGLFTKMTILGLSGYKDEDTFPYWFLQNVRGLEILVIEHSCFKKIFQDEGRMSEKTHTRIKWLTLSDLPNLEHICEDGFRIDPVLEFLEHLRVDSCPSLINLLPSSVTFTHLVQLEIKDCNGLTKLITSSTAQSLINLTTLKIEACNSLEEVILGEENVHITFISLEILILVSLPSLNKFCSSKCFFKFPLLEAVIVRECPRMKVFSEGYTSTPGLRKVEIAETHEEWFWKGNLNDTINNMFEDKVAFGKFKYLALSDYPEMKDLWYGQLDHQNVFCNLKHLVVNRCDFLSHVLFPSNVMQVLYGLEELEVTDCDSLEEVFDVKGMKSKDTLIKQSTQLKKLTLSKLPKLKHIWNEDPHDIINFGNLCTVDVSECQSLLYIFPLSLCEDLGHLEMLVIESCEVEQIVAMEEGPIKTNFNFPQLKIMQLLRLTNLKSFYQGKYILECPSLKTLNVYRCEALRMFSFGEALFQQALFSIDKVN 1768
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01884 1768 Gene3D Ribonuclease Inhibitor 1239 1516 IPR032675 -
Trre1g01884 1768 SUPERFAMILY L domain-like 936 1233 - -
Trre1g01884 1768 SUPERFAMILY RNI-like 1372 1606 - -
Trre1g01884 1768 Gene3D Ribonuclease Inhibitor 1534 1762 IPR032675 -
Trre1g01884 1768 Gene3D Ribonuclease Inhibitor 511 912 IPR032675 -
Trre1g01884 1768 Coils Coil 68 88 - -
Trre1g01884 1768 Gene3D - 149 301 IPR027417 -
Trre1g01884 1768 SMART AAA_5 172 314 IPR003593 GO:0016887
Trre1g01884 1768 Gene3D Ribonuclease Inhibitor 930 1238 IPR032675 -
Trre1g01884 1768 Pfam NB-ARC domain 158 393 IPR002182 GO:0043531
Trre1g01884 1768 SUPERFAMILY RNI-like 1541 1747 - -
Trre1g01884 1768 Gene3D - 308 396 IPR042197 -
Trre1g01884 1768 PRINTS Disease resistance protein signature 615 631 - -
Trre1g01884 1768 PRINTS Disease resistance protein signature 175 190 - -
Trre1g01884 1768 PRINTS Disease resistance protein signature 248 262 - -
Trre1g01884 1768 PRINTS Disease resistance protein signature 342 356 - -
Trre1g01884 1768 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 1074 1232 - -
Trre1g01884 1768 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 153 406 IPR027417 -
Trre1g01884 1768 SUPERFAMILY L domain-like 465 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01884 Trre-Chr1 15111792 15118600 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01884 174 628 WRKY Transcription Factor Family AT5G45050 23.926 3.96e-09 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01884 - - tpra:123924644 2442.15