Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01876 ATGGAAATTCTAACTTTTGTTGTTGGAAAAGTAGTAGATTATACTGTTGCGCCTATTGGACGTCAAGCAAGTTACTTGATATTCTACAAAGGCAATTTTAAGATGTTAGCGGATCATGTCAAAGACCTCCAGTCTGCAAAAGAAAGATTGCTTCATTCGGTTGAAGAAGAAAGGGGAAATGGTAAAGAAATCGAAAGAGATGTGGTGAACTGGTTGAAGAAAGTGGACGAGCTGATTGAAACAGCAAATCAGCTTGAACAAGATCCTCGTCGTGCCAATGTCAGGTGCTCAACATGGGGGTTCCCCAATTTGATTTTGCGTCATCAACTAAGTAGGAAAGCCAAAAAAATTGCAAATGATGTTGTCCAAGTTCAAGGCAAAGGGACGTTTGATCGAGTTGGTTACCTTCCAGCCCTAGATAGAGTAGCCTCCTCTTCCTCAATAAGAGGTGGTGAAATGTATGAGACAAGGGAGTCACTTAAGGAGAAACTTGTGAAGGCTTTATCAAACCCCAATTCACGCAACATTGGGATCTATGGTTTGGGTGGTGTGGGTAAGACCACTTTGGTGGAAGAAGTTAAACAAATAGCAAACCAACTTAAATTGTTCGATAAAGTGGTTATAACACATGTATCACAAAATCCAGACTTTAAAACCATTCAAGGGGAGATTGCAGATTTGTTGGGTTTGCAATTCAATGAAGAGACAATTTTTGGAAGAGCAAATCGCCTAAGACAAAGAATCAAGATGGAGAAAAGTATCCTTGTCATTCTAGATAATATATGGAGCAGACTTGATTTGAAGAAAGTGGGAATTCCATTTGGTAATGAACATAATGGTTGCAAATTATTGATGACATGTAGAAATCAAGATGTGTTGCTACAAATGGATGTTCCAAAGGATTTGACTTTCAAACTTGAACTTATGACTGAAGAGGAGGCTTGGAACTTGTTTCAATTTATGGCTGGGGATGTGGTTAAACATAACAATTTGAAAGATGTAGCAATTCAAGTTGCCCAAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACGGTGGCACGTGCAATGAGAAATAAGAGAGACATCCAATCCTGGAAAGATGCATTAAGGAAATTACAATGTAATGATCATACAGAGATGGACGCGTTAACTTATTCTGCTTTGGAATTGAGTTACAACTCATTGGAGAGTGATGAAATGAGGGATCTCTTCTTGCTTTTTGCATTAATGGAAGGTAACAATGCATACTACTTTCTGAAAGTTGCAATGGGTTTGAACATATTAAAGCATGTTAATACCATTGATGAGGCAAGAAACAAACTGTAA 1326 0.3831 MEILTFVVGKVVDYTVAPIGRQASYLIFYKGNFKMLADHVKDLQSAKERLLHSVEEERGNGKEIERDVVNWLKKVDELIETANQLEQDPRRANVRCSTWGFPNLILRHQLSRKAKKIANDVVQVQGKGTFDRVGYLPALDRVASSSSIRGGEMYETRESLKEKLVKALSNPNSRNIGIYGLGGVGKTTLVEEVKQIANQLKLFDKVVITHVSQNPDFKTIQGEIADLLGLQFNEETIFGRANRLRQRIKMEKSILVILDNIWSRLDLKKVGIPFGNEHNGCKLLMTCRNQDVLLQMDVPKDLTFKLELMTEEEAWNLFQFMAGDVVKHNNLKDVAIQVAQKCEGLPLRVVTVARAMRNKRDIQSWKDALRKLQCNDHTEMDALTYSALELSYNSLESDEMRDLFLLFALMEGNNAYYFLKVAMGLNILKHVNTIDEARNKL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01876 441 PRINTS Disease resistance protein signature 342 356 - -
Trre1g01876 441 PRINTS Disease resistance protein signature 175 190 - -
Trre1g01876 441 PRINTS Disease resistance protein signature 248 262 - -
Trre1g01876 441 SMART AAA_5 172 308 IPR003593 GO:0016887
Trre1g01876 441 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 406 IPR027417 -
Trre1g01876 441 Gene3D - 145 302 IPR027417 -
Trre1g01876 441 FunFam Probable disease resistance protein At1g61300 143 301 - -
Trre1g01876 441 Gene3D - 309 396 IPR042197 -
Trre1g01876 441 Pfam NB-ARC domain 158 393 IPR002182 GO:0043531
Trre1g01876 441 Coils Coil 68 88 - -
Trre1g01876 441 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 20 440 - -
Trre1g01876 441 Coils Coil 40 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01876 Trre-Chr1 15036825 15038150 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01876 174 431 WRKY Transcription Factor Family AT5G45050 26.866 1.26e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01876 - - mtr:25482804 687.182