Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01872 ATGGAAATTCTAACTTCTCTTGTTGGAAAACTCGTAGATTATACTGTAGCGCCTATTGGACGTCAAGCAAGTTACTTGATATTCTACAAAGGCAATTTTAAGATGTTAGCGGATCATGTCAAAGACCTCCAGGCTGCAAAAGAAAGATTGCTTCATTCGGTTGAAGAAGAAAGTGGAAATGGTAAAGAAATCGAAAGAGATGTGGTGAACTGGTTGGAGAAAGTGGACGAGCTGATTGAAACAGCAAATCAGCTTCAACAAGATCCTCGTCGTGCCAATGTCAGGTGCTCAACATGGGGGTTCCCCAATTTGATTTTGCGTCATCAACTAAGTAGGAAAGCCAAAAAAATTGCAAATGATGTTGTCCAAGTTCAAGGCAAAGGGACGTTTGATCGAGTTGGTTACCTTCCAACCCTAGATGGAGTAGCTTCCTCTTCCTCAATAAGAGGTGGTGAAATGTATGAGACAAGGGAGTCACTTAAGGAGAAAATTGTGAAGGCTTTATCAAACCCCAATTCACGCAACATTGGGATTTATGGTTTGGGTGGTGTGGGTAAGACCACTTTGGTGGAAGAAGTTAAACAAATAGCAAAGCAACTTAAATTGTTCGATAAAGTGGTTATGACACATGTATCTCAAAATCCAGACTTTAAAACCATTCAAGGGGAGATTGCAGATTTGTTGGGTTTGCGTTTCGACGAGGAGACAATTTTTGGAAGAGCAAATCGCCTGAGACAAAGAATCAAGATGGAGAAAAGTATCCTTGTCATTCTAGACAATATATGGAGCATGCTTGATTTGAAGAAAGTGGGAATCCCAATTGGTAATGAACATAATGGTTGCAAATTATTGATGACAAGTAGAAATCAAGATGTATTGCTGCAAATGGATGTTCCAATGGATTTGACTTTCAAACTTGAACTTATGAGTGAAAACGAGACATGGAAGTTGTTTCAATTTATGGCTGGAGATGTGGTTAAAGATAGAAATTTGAATGATGTAGCAATTCAAGTTGCCCAAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACGGTGGCACGTGCAATGAGAAATAAGAGAGACATCCAATCCTGGAAAGATGCATTAAGGAAATTACAATGTAATGATCATACAGAGATGGACGCGTTAACTTATTCTGCTTTGGAATTGAGTTACAACTCGTTGGAAAGTGATGAAATGAGGGATCTCTTCTTGCTTTTTGCATTAATGGAAGGTAACAATGCATACTACTTTCTGAAAGTTGCAATGGGTTTGAACATATTAAAGCATGTTAATACCATCGATGAGGCAAGAAACAAACTTTACACAATAATCAGATCCTTGGAGGTGACTTGTCTTCTGCTTGATGTTAAAAAAGTTGGGAATATCAGAATGCATGATTTTGTTCGTGATTTTGCTACCTCCATAGCACGTAGGGACAAACATGTATTGCTAAGAAAACAATCAGATGAGGAATGGCCATCCAATGATTTTTTAAATAGGTGCATGCAGATTGTTCTACCATTGGGTCATATCCACGATCTTCCTCAAACGATTGGTTGTCCAAACATTAAGTTGTTCTATTTGGCTTGTGTGAACCTATCTTTAAAGATCCCTGATACTTTTTTTGAGGGAATGGCCAGCCTTAGAGTGCTAGATTTAACACATCTGAAACTTGTCTTCATTACCCACCTCATTTCAGTTCCTAACCGACCTTAA 1719 0.3869 MEILTSLVGKLVDYTVAPIGRQASYLIFYKGNFKMLADHVKDLQAAKERLLHSVEEESGNGKEIERDVVNWLEKVDELIETANQLQQDPRRANVRCSTWGFPNLILRHQLSRKAKKIANDVVQVQGKGTFDRVGYLPTLDGVASSSSIRGGEMYETRESLKEKIVKALSNPNSRNIGIYGLGGVGKTTLVEEVKQIAKQLKLFDKVVMTHVSQNPDFKTIQGEIADLLGLRFDEETIFGRANRLRQRIKMEKSILVILDNIWSMLDLKKVGIPIGNEHNGCKLLMTSRNQDVLLQMDVPMDLTFKLELMSENETWKLFQFMAGDVVKDRNLNDVAIQVAQKCEGLPLRVVTVARAMRNKRDIQSWKDALRKLQCNDHTEMDALTYSALELSYNSLESDEMRDLFLLFALMEGNNAYYFLKVAMGLNILKHVNTIDEARNKLYTIIRSLEVTCLLLDVKKVGNIRMHDFVRDFATSIARRDKHVLLRKQSDEEWPSNDFLNRCMQIVLPLGHIHDLPQTIGCPNIKLFYLACVNLSLKIPDTFFEGMASLRVLDLTHLKLVFITHLISVPNRP 572
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01872 572 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 406 IPR027417 -
Trre1g01872 572 Gene3D - 147 301 IPR027417 -
Trre1g01872 572 SMART AAA_5 172 314 IPR003593 GO:0016887
Trre1g01872 572 Coils Coil 68 88 - -
Trre1g01872 572 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 20 562 - -
Trre1g01872 572 Gene3D - 308 396 IPR042197 -
Trre1g01872 572 Pfam NB-ARC domain 158 393 IPR002182 GO:0043531
Trre1g01872 572 PRINTS Disease resistance protein signature 248 262 - -
Trre1g01872 572 PRINTS Disease resistance protein signature 175 190 - -
Trre1g01872 572 PRINTS Disease resistance protein signature 342 356 - -
Trre1g01872 572 PRINTS Disease resistance protein signature 544 560 - -
Trre1g01872 572 FunFam Probable disease resistance protein At1g61300 145 301 - -
Trre1g01872 572 SUPERFAMILY L domain-like 464 563 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g01872 Trre-Chr1 15003507 15005225 Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01872 174 570 WRKY Transcription Factor Family AT5G45050 24.235 8.17e-12 66.6
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01872 - - mtr:25482804 870.922