Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01859 ATGTATGAGACAAGGGAGTCACTTAAGGAGAAACTTGTGAAGGCTTTATCAAACCCCAATTCACGCAACATTGGGATCTATGGTTTGGGTGGTGTGGGTAAGACCACTTTGGTGGAAGAAGTTAAACAAATAGCAAACCAACTTAAATTGTTCGATAAAGTGGTTATAACACATGTATCACAAAATCCAGACTTTAAAACCATTCAAGGGGAGATTGCAGATTTGTTGGGTTTGCAATTCAATGAAGAGACAATTTTTGGAAGAGCAAATCGCCTAAGACAAAGAATCAAGATGGAGAAAAGTATCCTTGTCATTCTAGATAATATATGGAGCAGACTTGATTTGAAGAAAGTGGGAATTCCATTTGGTAATGAACATAATGGTTGCAAATTATTGATGACATGTAGAAATCAAGATGTGTTGCTACAAATGGATGTTCCAAAGGATTTGACTTTCAAACTTGAACTTATGACTGAAGAGGAGGCTTGGAACTTGTTTCAATTTATGGCTGGGGATGTGGTTAAACATAACAATTTGAAAGATGTAGCAATTCAAGTTGCCCAAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACGGTGGCACGTGCAATGAGAAATAAGAGAGACATCCAATCCTGGAAAGATGCATTAAGGAAATTACAATGTAATGATCATACAGAGATGGACACGTTAACTTATTCTGCTTTGGAATTGAGTTACAACTCGTTGGAGAGTGATGAAATGAGGGATATCTTCTTGCTTTTTGCAGTAATGGAAGGTAACAAAGTAGAGTACTTTCTGAAAGTTGCAATGGGTTTGAATATATTAAAGCATGTTAATACCATGGATGAGGCAAGAAACAAACTTTACACAATAATCAGATCCTTGGAGGTGACTTGTCTTCTGCTTGATGTTAAAAAAGTTGGGAATATCAGAATGCATGATTTTGTTCGTGATTTTGCTACCTCCATAGCACGTAGTGACAAACATGTATTGCTAAGAAAACAATCAGATGAGGAATGGCCATCCAATGATTTTTTAAATATGTGCATGCAGATTGTTCTACCATTGGGTCATATCCACGATCTTCCTCAAACGATTGGTTGTCCAAACATTAAGTTGTTCTATTTGGCTTGTGAGAACCTATCTTTAAAGATCCCTGATACTTTTTTTGAGGGAATGGCCAGCCTTAGAGTGCTAGATTTAACACATCTGAACTTGTCTTCATTACCCACCTCATTTTGGTTCCTAACCGACCTTAAAACGCTGTGTTTGAATTTTTGCATTTTGGAAAATATGGATGCAATAGAAGGTTTGAAAAATTTACAAATTCTTAGCCTCGCATATTCTTCAATGATCAAGTTTCCAAGTGAAATAGGGAAATTGACTCAATTGAGAATGCTTGATTTGAGCAACTCAGGAATTGAAGTACTCCCATCCAACATCATATCAAATTTGATTAACTTGGAGGAGTTGTACATGGGCAATACCTCTATTAATTGGGAAGATGTGAATTCAACGGTTCAAAATGAAAATGCTAGTATTGCTGAGCTTCAGAATCTACCCAAGTTGACTGCTCTAGAATTACAAATTCGAGAGACTTGGATGTTGCCAAGGGACATGCAATTGATGTTTGAGAAGCTGAATTTTTTTAAAATTGCTATCGGAGATGTATGGGAATGGGAAGACATTGAGGATGAAACCTTAAAAACATTGATGCTCAAACTTGGTACCAACATACATTTAGAGCACGGAATTAAAGCATTGATTAAAGGTGTTGAGAATTTGTACTTGGATGATGTTGATGGAATTCAAAATGTGCTTTATCAACTAAATGGGGAAGGATTTCCATTGCTGAAACATCTTCACGTCCAAAATAATGCAAACTTGAAGCACATTGTTGACTCTAAAGAGAGAATTCAGGTGTCCTTTCCCATCTTGGAAACACTAGTACTTCACAATCTTAAAAACTTGGAGCATATATGTCATGGTCCACTTTCAATGACTTCTTTTGAAAGTCTTAGTGTTATCAAAGTAAAAAATTGTGTCCAATTAAAGTATCTTTTCTCCTATACATTGGTTAAAGAACTTTCCCACCTTTCAGAAATTGAAGTCTGCCACTGCGATTATATGAAGAAGATTGTGCTCAAAGACAACAATTCAAGTGCAAATAATGATATAGATAATGAAAAAATTGATTTTCTTCTATTGCGTTCTTTAACTCTAGAACATTTGGAGACAATTGATGATTTCTTCTCTTCTCATTCGATGAATTCCAGAAGTGAGCAAAAATATCATGATTTAGAGCCTGATGTTTCTGCCCCATTTTTCAATGCTCAGGTTGCATTTCCTAAATTGGATACCCTCAAATTGAGCTCATTCCTCAATTTGAATAAAATTTGGGATGACAATTATGATTCTATGGACAACTTGACTAGCTTGATTGTGGATAATTGTGGCGGGTTGAAGTACTTATTCTCATCTACTGTGGTTGAAAGTTTTAAGAACCTAAAACACCTTGAAATAAGTAATTGTGCTTTGATGGAGGAGATTATAGCTAAAGAAGAGGGAAGAGGTGCATCAGAGGAAGAGGTTCAGTTTTGA 2604 0.3602 MYETRESLKEKLVKALSNPNSRNIGIYGLGGVGKTTLVEEVKQIANQLKLFDKVVITHVSQNPDFKTIQGEIADLLGLQFNEETIFGRANRLRQRIKMEKSILVILDNIWSRLDLKKVGIPFGNEHNGCKLLMTCRNQDVLLQMDVPKDLTFKLELMTEEEAWNLFQFMAGDVVKHNNLKDVAIQVAQKCEGLPLRVVTVARAMRNKRDIQSWKDALRKLQCNDHTEMDTLTYSALELSYNSLESDEMRDIFLLFAVMEGNKVEYFLKVAMGLNILKHVNTMDEARNKLYTIIRSLEVTCLLLDVKKVGNIRMHDFVRDFATSIARSDKHVLLRKQSDEEWPSNDFLNMCMQIVLPLGHIHDLPQTIGCPNIKLFYLACENLSLKIPDTFFEGMASLRVLDLTHLNLSSLPTSFWFLTDLKTLCLNFCILENMDAIEGLKNLQILSLAYSSMIKFPSEIGKLTQLRMLDLSNSGIEVLPSNIISNLINLEELYMGNTSINWEDVNSTVQNENASIAELQNLPKLTALELQIRETWMLPRDMQLMFEKLNFFKIAIGDVWEWEDIEDETLKTLMLKLGTNIHLEHGIKALIKGVENLYLDDVDGIQNVLYQLNGEGFPLLKHLHVQNNANLKHIVDSKERIQVSFPILETLVLHNLKNLEHICHGPLSMTSFESLSVIKVKNCVQLKYLFSYTLVKELSHLSEIEVCHCDYMKKIVLKDNNSSANNDIDNEKIDFLLLRSLTLEHLETIDDFFSSHSMNSRSEQKYHDLEPDVSAPFFNAQVAFPKLDTLKLSSFLNLNKIWDDNYDSMDNLTSLIVDNCGGLKYLFSSTVVESFKNLKHLEISNCALMEEIIAKEEGRGASEEEVQF 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01859 867 SUPERFAMILY L domain-like 312 849 - -
Trre1g01859 867 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 254 IPR027417 -
Trre1g01859 867 Gene3D - 2 150 IPR027417 -
Trre1g01859 867 Gene3D Ribonuclease Inhibitor 730 855 IPR032675 -
Trre1g01859 867 SMART AAA_5 20 156 IPR003593 GO:0016887
Trre1g01859 867 Gene3D Ribonuclease Inhibitor 357 729 IPR032675 -
Trre1g01859 867 Pfam NB-ARC domain 6 241 IPR002182 GO:0043531
Trre1g01859 867 Gene3D - 157 244 IPR042197 -
Trre1g01859 867 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 731 853 - -
Trre1g01859 867 FunFam Probable disease resistance protein At1g61300 4 149 - -
Trre1g01859 867 Pfam Leucine rich repeat 373 427 IPR001611 GO:0005515
Trre1g01859 867 SMART LRR_typ_2 394 417 IPR003591 -
Trre1g01859 867 SMART LRR_typ_2 462 485 IPR003591 -
Trre1g01859 867 PRINTS Disease resistance protein signature 23 38 - -
Trre1g01859 867 PRINTS Disease resistance protein signature 832 848 - -
Trre1g01859 867 PRINTS Disease resistance protein signature 190 204 - -
Trre1g01859 867 PRINTS Disease resistance protein signature 96 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01859 Trre-Chr1 14786630 14789793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01859 22 473 WRKY Transcription Factor Family AT5G45050 24.224 5.94e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01859 - - mtr:25482804 1321.22