Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01842 ATGTCTTCACTTGAAAAGATAGATTTATATAATAACAACTTTTCAGGATTGATCCCTCAATCTATCGTTAACCTATCTTCAGTTAAAGGCATCGATTTATCTTACAATTACTTTTCAGGTCCATTACCCGAGAAGATTCACTATCTTGATCAACTTGAGATTCTCTATTTGTCAAACAACGACCTTAGTGGATCTATTCCATCCAAACTCCTCAACATGTCACTACTGAAAACTTTGACTCTTGAAAACAATAATTTCTGGGGCATTATTCCATCAAATAAGGGATACAATCTTCCAAAATTGAAATATTTACACTTGGATCATAACAATTTTGTTGGAAATATTCCAAATAGTATATTCAATTCTTCTGAGTTGATTGATTTCCAATTGAATTCCAATGCATTTAGTGGAACTCTACCAAATATTGCTTTTGGAAATTTAAAGTTCCTCAAAACAATTCTCATATATGACAACAATTTGACAATAGATGATTCTCATCAATTTTTTACTTCCTTGTCAAATTGTAGATCTTTAGCATATCTAGAAATAGCAGGGAATCATATACCATCCAATCTTCCTAAGTCAATTGGAAACATAACTTGCATAAAATTTGTGGCAGATTCATGTGGATTTTTTGGTAATATTCCCCTAGAAGTTGGAAACATGAGCAAATTGATATACTTTGATCTATTTGGGAATAACATGAATGGACCAATACCTGGTACATTCAAAGGGTTACAGAACCTTCAGTTATTGGATCTTGGAAATAGTGGAATACAAGGATCATTTATTGAGGAGCTATGTGAAATTGAGAGTTTGAGTGAGTTGTATCTTGAAAACAATAAGCTTTTTGGAGTTTTACCATCATGTTTGGGAAATATGACTTATCTTAGAAAGATATACATAGATTCTAACAATTTAAACTCTATGATACCTTCCTCTCTTTGGAGTCTCAAAGATATCTTAGAGGTAAGTTTGTCCGATAATGCATTTGTCGGTAATCTTTCATCCGAGATTGGAAATTTGAGAGCAATTACACTATTGGATCTGTCAAGAAATCAAATTTCAAGTAACATTCCTTCAACCATCAGTTTCTTAAATAATTTGCAGAATCTCTCCTTAGCGCAAAACAAACTTTATGGGTCAATTCCCACATCACTTGGTGACATGGTAGGCTTGATCTCCTTGGACTTATCCCAAAATATGTTAACCGGTGTTATTCCAAATTCCGTAGAATCACTTTTATATCTTCAAAACATCAACTTGTCATACAATAGGTTACAAGGACGGATTCCTGATGTTGGAATTTTCAAAACTTTCACGGCTCAATCTTTTATGCATAATGAAGCACTTTGTGGTAATCCTCGCCTAAATGTACCTATGTGTGATAACCATGTTAAGAAGAAAAGTTCAACAGTAAAGAAGCTATTACTCAAATGCATAATTCCCATAGCTGTGTCAACCATTTTGATTGTTGCAAGCATCATAATTTTGAAAGTTAAGAAAAGGAAAAAGGTTGCAAATACTCTTGAAAGAGGACAATCTAAAACACATACAGAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTACGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTACGGAATTATGCTAATGGAAATCTTCACAAGAAAAAAACCAACAGATGATATGTTTGTTGCAGAGCTAAGTTTGAAAACATGGATCAATGAATCAATGCCTAATTCTATTATGGATGTCTTGGATTCTAATTTAGTCCAACAATATGGGGAACAAATTGATGACATAGTTACATACATGTCAACTATTTTCGGTTTAGCCATGAATTGTTGTGAATATTCACCAGAAGCAAGAATTGATATGGCAGATGTAACTGCTTCCCTGATCAAACTCAAGACTTTGGTTCTTAGCAAAAACATGGTCTAG 1944 0.3369 MSSLEKIDLYNNNFSGLIPQSIVNLSSVKGIDLSYNYFSGPLPEKIHYLDQLEILYLSNNDLSGSIPSKLLNMSLLKTLTLENNNFWGIIPSNKGYNLPKLKYLHLDHNNFVGNIPNSIFNSSELIDFQLNSNAFSGTLPNIAFGNLKFLKTILIYDNNLTIDDSHQFFTSLSNCRSLAYLEIAGNHIPSNLPKSIGNITCIKFVADSCGFFGNIPLEVGNMSKLIYFDLFGNNMNGPIPGTFKGLQNLQLLDLGNSGIQGSFIEELCEIESLSELYLENNKLFGVLPSCLGNMTYLRKIYIDSNNLNSMIPSSLWSLKDILEVSLSDNAFVGNLSSEIGNLRAITLLDLSRNQISSNIPSTISFLNNLQNLSLAQNKLYGSIPTSLGDMVGLISLDLSQNMLTGVIPNSVESLLYLQNINLSYNRLQGRIPDVGIFKTFTAQSFMHNEALCGNPRLNVPMCDNHVKKKSSTVKKLLLKCIIPIAVSTILIVASIIILKVKKRKKVANTLERGQSKTHTETLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTRKKPTDDMFVAELSLKTWINESMPNSIMDVLDSNLVQQYGEQIDDIVTYMSTIFGLAMNCCEYSPEARIDMADVTASLIKLKTLVLSKNMV 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01842 647 Pfam Leucine rich repeat 3 62 IPR001611 GO:0005515
Trre1g01842 647 Pfam Leucine rich repeat 272 330 IPR001611 GO:0005515
Trre1g01842 647 ProSiteProfiles Protein kinase domain profile. 249 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01842 647 Gene3D Transferase(Phosphotransferase) domain 1 497 639 - -
Trre1g01842 647 Gene3D Ribonuclease Inhibitor 1 96 IPR032675 -
Trre1g01842 647 SUPERFAMILY L domain-like 208 455 - -
Trre1g01842 647 Pfam Leucine Rich Repeat 393 414 IPR001611 GO:0005515
Trre1g01842 647 SUPERFAMILY L domain-like 2 203 - -
Trre1g01842 647 Gene3D Ribonuclease Inhibitor 144 471 IPR032675 -
Trre1g01842 647 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 170 466 - -
Trre1g01842 647 PANTHER OS04G0122200 PROTEIN 2 69 - -
Trre1g01842 647 SMART LRR_typ_2 390 413 IPR003591 -
Trre1g01842 647 SMART LRR_typ_2 98 122 IPR003591 -
Trre1g01842 647 SMART LRR_typ_2 49 73 IPR003591 -
Trre1g01842 647 SMART LRR_typ_2 294 318 IPR003591 -
Trre1g01842 647 SMART LRR_typ_2 270 293 IPR003591 -
Trre1g01842 647 SMART LRR_typ_2 342 366 IPR003591 -
Trre1g01842 647 SMART LRR_typ_2 1 24 IPR003591 -
Trre1g01842 647 Pfam Protein tyrosine and serine/threonine kinase 512 633 IPR001245 GO:0004672|GO:0006468
Trre1g01842 647 SUPERFAMILY Protein kinase-like (PK-like) 515 638 IPR011009 -
Trre1g01842 647 FunFam Leucine-rich repeat receptor protein kinase EMS1 1 93 - -
Trre1g01842 647 Gene3D Ribonuclease Inhibitor 97 143 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01842 Trre-Chr1 14571065 14578814 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01842 523 643 Receptor kinase-like Gene Family AT5G20480 31.405 8.70e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre1g01842 PK_Tyr_Ser-Thr 1.3e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01842 - K13420 mtr:25481440 578.17