Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01841 ATGTTGGCTAATAATTGGTCAACTTCATTTTCTGTATGCACTTGGGTTGGTGTAACTTGTGATGAGAATCACAATAGAGTCCACGCCTTAAATCTCACAAACATGGGTCTTAGAGGATTGATCCCTCAATCTATCGTTAACCTATCTTCAGTTAAAGGCATCGATTTATCTTACAATTACTTTTCAGGTCCATTACCCGAGAAGATTCACTATCTTGATCAACTTGAGATTCTCTATTTGTCAAACAACGACCTTAGTGGATCTATTCCATCCAAACTCCTCAACATGTCACTACTGAAAACTTTGACTCTTGAAAACAATAATTTCTGGGGCATTATTCCATCAAATAAGGGATACAATCTTCCAAAATTGAAATATTTACACTTGGATCATAACAATTTTGTTGGAAATATTCCAAATAGTATATTCAATTCTTCTGAGTTGATTGATTTCCAATTGAATTCCAATGCATTTAGTGGAACTCTACCAAATATTGCTTTTGGAAATTTAAAGTTCCTCAAAACAATTCTCATATATGACAACAATTTGACAATAGATGATTCTCATCAATTTTTTACTTCCTTGTCAAATTGTAGATCTTTAGCATATCTAGAAATAGCAGGGAATCATATACCATCCAATCTTCCTAAGTCAATTGGAAACATAACTTGCATAAAATTTGTGGCAGATTCATGTGGATTTTTTGGTAATATTCCCCTAGAAGTTGGAAACATGAGCAAATTGATATACTTTGATCTATTTGGGAATAACATGAATGGACCAATACCTGGTACATTCAAAGGGTTACAGAACCTTCAGTTATTGGATCTTGGAAATAGTGGAATACAAGGATCATTTATTGAGGAGCTATGTGAAATTGAGAGTTTGAGTGAGTTGTATCTTGAAAACAATAAGCTTTTTGGAGTTTTACCATCATGTTTGGGAAATATGACTTATCTTAGAAAGATATACATAGATTCTAACAATTTAAACTCTATGATACCTTCCTCTCTTTGGAGTCTCAAAGATATCTTAGAGGTAAGTTTGTCCGATAATGCATTTGTCGGTAATCTTTCATCCGAGATTGGAAATTTGAGAGCAATTACACTATTGGATCTGTCAAGAAATCAAATTTCAAGTAACATTCCTTCAACCATCAGTTTCTTAAATAATTTGCAGAATCTCTCCTTAGCGCAAAACAAACTTTATGGGTCAATTCCCACATCACTTGGTGACATGGTAGGCTTGATCTCCTTGGACTTATCCCAAAATATGTTAACCGGTGTTATTCCAAATTCCGTAGAATCACTTTTATATCTTCAAAACATCAACTTGTCATACAATAGGTTACAAGGACGGATTCCTGATGTTGGAATTTTCAAAACTTTCACGGCTCAATCTTTTATGCATAATGAAGCACTTTGTGGTAATCCTCGCCTAAATGTACCTATGTGTGATAACCATGTTAAGAAGAAAAGTTCAACAGTAAAGAAGCTATTACTCAAATGCATAATTCCCATAGCTGTGTCAACCATTTTGATTGTTGCAAGCATCATAATTTTGAAAGTTAAGAAAAGGAAAAAGGTTGCAAATACTCTTGAAAGAGGACAATCTAAAACACATACAGAGACTTTGGCTACTATTGGATACCTTGCACCAGAGTACGGATCTAGTGGAATTGTTTCTGTCAAAGGAGATGTGTACAGCTACGGAATTATGCTAATGGAAATCTTCACAAGAAAAAAACCAACAGATGATATGTTTGTTGCAGAGCTAAGTTTGAAAACATGGATCAATGAATCAATGCCTAATTCTATTATGGATGTCTTGGATTCTAATTTAGTCCAACAATATGGGGAACAAATTGATGACATAGTTACATACATGTCAACTATTTTCGGTTTAGCCATGAATTGTTGTGAATATTCACCAGAAGCAAGAATTGATATGGCAGATGTAACTGCTTCCCTGATCAAACTCAAGACTTTGGTTCTTAGCAAAAACATGGTCTAG 2013 0.3423 MLANNWSTSFSVCTWVGVTCDENHNRVHALNLTNMGLRGLIPQSIVNLSSVKGIDLSYNYFSGPLPEKIHYLDQLEILYLSNNDLSGSIPSKLLNMSLLKTLTLENNNFWGIIPSNKGYNLPKLKYLHLDHNNFVGNIPNSIFNSSELIDFQLNSNAFSGTLPNIAFGNLKFLKTILIYDNNLTIDDSHQFFTSLSNCRSLAYLEIAGNHIPSNLPKSIGNITCIKFVADSCGFFGNIPLEVGNMSKLIYFDLFGNNMNGPIPGTFKGLQNLQLLDLGNSGIQGSFIEELCEIESLSELYLENNKLFGVLPSCLGNMTYLRKIYIDSNNLNSMIPSSLWSLKDILEVSLSDNAFVGNLSSEIGNLRAITLLDLSRNQISSNIPSTISFLNNLQNLSLAQNKLYGSIPTSLGDMVGLISLDLSQNMLTGVIPNSVESLLYLQNINLSYNRLQGRIPDVGIFKTFTAQSFMHNEALCGNPRLNVPMCDNHVKKKSSTVKKLLLKCIIPIAVSTILIVASIIILKVKKRKKVANTLERGQSKTHTETLATIGYLAPEYGSSGIVSVKGDVYSYGIMLMEIFTRKKPTDDMFVAELSLKTWINESMPNSIMDVLDSNLVQQYGEQIDDIVTYMSTIFGLAMNCCEYSPEARIDMADVTASLIKLKTLVLSKNMV 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01841 670 SUPERFAMILY L domain-like 3 225 - -
Trre1g01841 670 SUPERFAMILY L domain-like 231 478 - -
Trre1g01841 670 Gene3D Ribonuclease Inhibitor 227 487 IPR032675 -
Trre1g01841 670 Pfam Leucine Rich Repeat 416 437 IPR001611 GO:0005515
Trre1g01841 670 FunFam Nuclear pore complex protein NUP107 1 119 - -
Trre1g01841 670 Gene3D Transferase(Phosphotransferase) domain 1 520 662 - -
Trre1g01841 670 Pfam Leucine rich repeat 27 85 IPR001611 GO:0005515
Trre1g01841 670 Pfam Leucine rich repeat 295 353 IPR001611 GO:0005515
Trre1g01841 670 Gene3D Ribonuclease Inhibitor 142 226 IPR032675 -
Trre1g01841 670 SUPERFAMILY Protein kinase-like (PK-like) 538 661 IPR011009 -
Trre1g01841 670 ProSiteProfiles Protein kinase domain profile. 272 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01841 670 Gene3D Ribonuclease Inhibitor 1 140 IPR032675 -
Trre1g01841 670 SMART LRR_typ_2 121 145 IPR003591 -
Trre1g01841 670 SMART LRR_typ_2 413 436 IPR003591 -
Trre1g01841 670 SMART LRR_typ_2 72 96 IPR003591 -
Trre1g01841 670 SMART LRR_typ_2 317 341 IPR003591 -
Trre1g01841 670 SMART LRR_typ_2 293 316 IPR003591 -
Trre1g01841 670 SMART LRR_typ_2 365 389 IPR003591 -
Trre1g01841 670 PANTHER OS04G0122200 PROTEIN 540 661 - -
Trre1g01841 670 Pfam Protein tyrosine and serine/threonine kinase 535 656 IPR001245 GO:0004672|GO:0006468
Trre1g01841 670 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 194 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01841 Trre-Chr1 14570633 14578814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01841 546 666 Receptor kinase-like Gene Family AT5G20480 31.405 7.62e-14 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre1g01841 PK_Tyr_Ser-Thr 1.4e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01841 - K13420 mtr:25481440 575.474