Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01836 ATGTCTATGTTGGATCTTAATGTTGGCATCATCAATGTTGATGATTATTCAACTAATGTTCAAAAGGGGTTGCAACTTCAATCTTTTCCACCTGAAATATCAGAATCTAGAACCTCAAACTCTTCTGTATCAAATCCAGCAGAGGAATATTCCTCAAATAATTCCTCTACTTTCATTTTTGACCTATTGAAGAAAGAAAAGGATGTCTTAGAAAGAGTCAAGGAAGAAAAAAATGCACAAAGAATCACAAGGACCTTTTTCCCTGTGAGTGCTGATAGAGGAGGTAGATTATGTGATTCCATTACTCAAAAGGTGAACTTTGATGATCAAAATGGACACAGAATCTTGCAGCAAAAGCAACCTCAAGTTAGGAAAAGTAGGAGAGGACCAAGGTCTCGAAGCTCGCAGTATCGGGGTGTTACCTTCTACCGTAGAACTGGCAGATGGGAGTCACATATATGGGATTGTGGGAAGCAGGTCTATTTGGGTGGATTTGACACTTCTCATGCTGCTGCAAGAGCATATGATAGGGCTGCTATTATGTTTAGGGGAGTTGATGCTGATATAAACTTCATTTTGAGTGATTATGAAGAGGATTTGAAGCAGATGAGAGGGTTGAGTAAGGAAGAATTTGTCCAAAGACTTCGTAGACAAACCAATGGAAACTCAAGGAGAAGTTCAACATACAAAAGTGCATTACCTTTTCAAAAATATGGTCAAGAAGATCCACCATTTGTGGCCAAAACATTTTGTCATAAGTCACACATGAAGCTTGATCATGAAGTAGAAACCAGTTTTAAGGCCTCTACTACTTATAAGGGAGAAATAATTGCAAATTCCAACAAATTACATAATCTTGATTTGAGTCTAAGGATTCCAGCATCTTCCAAACAATTGAATAACAATAATTTTGGAGTTGAATTTTCTTCTGGATGTACAACTTATATGACACCTCAAGAAAGGGGAACAATGGAGAAGGCATTGTTAAACATTAAAAAGGAAGTTCCATTGCAACAAGTATTGGCGTGGCAATTTTGCAGCAATGGGAGAAGCATTGCATTGGGGTCGTTGCAATCAAATGTAGCAGCATCATCAGGATTCGTTTCTTCGCCCACACTTCCTCCAATCAACTCACATACAATTTTATCACTGACTCAACCACAATATTATAGATGA 1176 0.3793 MSMLDLNVGIINVDDYSTNVQKGLQLQSFPPEISESRTSNSSVSNPAEEYSSNNSSTFIFDLLKKEKDVLERVKEEKNAQRITRTFFPVSADRGGRLCDSITQKVNFDDQNGHRILQQKQPQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTSHAAARAYDRAAIMFRGVDADINFILSDYEEDLKQMRGLSKEEFVQRLRRQTNGNSRRSSTYKSALPFQKYGQEDPPFVAKTFCHKSHMKLDHEVETSFKASTTYKGEIIANSNKLHNLDLSLRIPASSKQLNNNNFGVEFSSGCTTYMTPQERGTMEKALLNIKKEVPLQQVLAWQFCSNGRSIALGSLQSNVAASSGFVSSPTLPPINSHTILSLTQPQYYR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01836 391 SUPERFAMILY DNA-binding domain 135 192 IPR016177 GO:0003677
Trre1g01836 391 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 84 231 - -
Trre1g01836 391 SMART rav1_2 136 198 IPR001471 GO:0003700|GO:0006355
Trre1g01836 391 MobiDBLite consensus disorder prediction 28 50 - -
Trre1g01836 391 Coils Coil 60 83 - -
Trre1g01836 391 Gene3D AP2/ERF domain 135 193 IPR036955 GO:0003700|GO:0006355
Trre1g01836 391 MobiDBLite consensus disorder prediction 110 137 - -
Trre1g01836 391 FunFam AP2-like ethylene-responsive transcription factor 135 194 - -
Trre1g01836 391 Pfam AP2 domain 136 184 IPR001471 GO:0003700|GO:0006355
Trre1g01836 391 CDD AP2 136 191 IPR001471 GO:0003700|GO:0006355
Trre1g01836 391 ProSiteProfiles AP2/ERF domain profile. 136 192 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01836 Trre-Chr1 14537576 14540896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01836 3 390 AP2-EREBP Transcription Factor Family AT5G60120 36.933 7.93e-60 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g01836 AP2 4.2e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01836 K09284 - gmx:100783626 389.808