Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01828 ATGAAAGAGAAATATGAATGGGAAAACACTAGAAAGAGAATAGGTCATGTTGATGGAATTAATGTTGGTGACTTGTTTCAATATAGGGCTGAACTTGTTGTCATTGGTCTTCATCAACAATTCCAAAGTGGTATTGATTATTTGGATACAGGTGAAAACTCTTTGGCTACTAGCATTGTTGTAACTCCTAAGTATTCTAATGTTATGAAGTCTAGTGGTTGTTTGATTTATGAAGGTCAAGGTAGTAACCCTAGAGTGCGGAAACCTGTTGCGCCTCATGATCAGAAATTGGAAAAAGGAAATCTTGCTTTGCGGAATAGTATGATTGCTAAGCGTCCTGTTAGGGTTATATTGAAGATTTTCGGAAAATTGGATTGTATGGAAGAGTGGAGGAACAATGTTTCTAATTGTTCATTTAAATATGATGGTTTGTATTTGGTCGACAATATGACTCAAGAAAGGGGAGAATTTGGAAAACTTGTGTTCAAGTTTAAACTTAACAAAATTTCGGACCAACCCGCTCGTGTTTCCCTTTCCCCCCGAGATGTTGTTATGGAAACGGAAACTTTCCAAAAGAGACTTAAGTCTAGAAATCATGCTGCCCCCAAGGATATTGTTCGAATCATTGATATTTCGGAGGGGAAAGAAAAGTTTCCTATTCGGGTGGTTAAACCGAAAAGTTGTGAGGAGATAATTAAACCTTTTGATTACCTAGCCAGAATGACATATCCAAAGATGAATCATAAACTACTAGGTCGTGGATGTAATTGCGCAAATGCATTTGGTGGTTGTCTTAATTGTGTTTGCATAGCTAAGAATGGCGGGGCAATATCATATGATGGTAACAAAAGACTTGTTTCTCCTTTGAAATCATCCTTTATATATGAGTGCGGCCCTTCTTGTGCGTGTTCATCATCTTGCATCAACCGAGTGAGTCAATGTGGTATTCAGTTCCAACTTGAAATCTTCAGAACAAAATCAAAGGGATGGGGTGTTCGAACGCGATCTTTCATTCCATCTGGAAGCTTTGTGTGCGAGCTCGTTGGAGAATTTGTTCATCACAACAATAAAAACGCAGGATCAAATCTATATGCTGCTAACTATATATTTAATTTAGGTTTTGGCAAGGGCTTCATTGATGCAACTAGATATGGAAACATTGCAAGATTTATAAATCATAGCTGTTCTCCTAACCTATGTATGAAAGATGTTATATATGATGACTATGATAAGAGTGTACCCCACAAAATGTTGTTTGCTGTGAAGGACATACCCGCAGGTAGAGAGCTATGTTATGATTACAACTGCTTCAAGAGAAATTTCAAGGTTGAGAGTAATAATTGCTACTGTTGGTCATCAGAATGCCATGGACAAATTTACATCTGA 1386 0.3745 MKEKYEWENTRKRIGHVDGINVGDLFQYRAELVVIGLHQQFQSGIDYLDTGENSLATSIVVTPKYSNVMKSSGCLIYEGQGSNPRVRKPVAPHDQKLEKGNLALRNSMIAKRPVRVILKIFGKLDCMEEWRNNVSNCSFKYDGLYLVDNMTQERGEFGKLVFKFKLNKISDQPARVSLSPRDVVMETETFQKRLKSRNHAAPKDIVRIIDISEGKEKFPIRVVKPKSCEEIIKPFDYLARMTYPKMNHKLLGRGCNCANAFGGCLNCVCIAKNGGAISYDGNKRLVSPLKSSFIYECGPSCACSSSCINRVSQCGIQFQLEIFRTKSKGWGVRTRSFIPSGSFVCELVGEFVHHNNKNAGSNLYAANYIFNLGFGKGFIDATRYGNIARFINHSCSPNLCMKDVIYDDYDKSVPHKMLFAVKDIPAGRELCYDYNCFKRNFKVESNNCYCWSSECHGQIYI 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01828 461 ProSiteProfiles Pre-SET domain profile. 253 315 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g01828 461 ProSiteProfiles SET domain profile. 318 435 IPR001214 GO:0005515
Trre1g01828 461 SMART G9a_1 10 172 IPR003105 -
Trre1g01828 461 Gene3D SET domain 185 446 IPR046341 -
Trre1g01828 461 SMART set_7 318 441 IPR001214 GO:0005515
Trre1g01828 461 Pfam SET domain 329 435 IPR001214 GO:0005515
Trre1g01828 461 SUPERFAMILY SET domain 195 450 IPR046341 -
Trre1g01828 461 Pfam Pre-SET motif 211 310 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Trre1g01828 461 SUPERFAMILY PUA domain-like 1 178 IPR015947 -
Trre1g01828 461 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 4 454 - -
Trre1g01828 461 Pfam SAD/SRA domain 14 172 IPR003105 -
Trre1g01828 461 ProSiteProfiles YDG domain profile. 15 168 IPR003105 -
Trre1g01828 461 Gene3D - 1 184 IPR036987 -
Trre1g01828 461 SMART preset_2 208 302 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01828 Trre-Chr1 14441367 14442842 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01828 9 457 Su(var)3-9 homologs AT1G73100 33.333 2.04e-71 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre1g01828 SAD_SRA 2.3e-38 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01828 - - tpra:123891631 560.836