Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01824 ATGTTGGCTATATCCCCTCCTTTGTTCTCAACAATTGGATGGCCTTTTGAAGAGACCATAAGCCATAATCTGCATCAGAATCACTTCTACAAAGACATTACTATTGATCAATTATTTGATATTAATAATCAAGTTGAGGCTGAAAATTCAACTGATCCATCACAAGCCACAAGCTGTGACCTTAGTATGGTCAAGAAGCTTGTTCATAATGCTAGTGAACGCGATCGACGCAAGAAGATCAATAATTTGTATTCTTCACTTCGTTCACTTCTTCCTGTTTCAGATCAAATGAAGAAATTGAGCATTCCGGCAACAATTTCGCGAGTCCTAAAATACATACCGGAATTACAGAAACAGGTGGAAGGACTAATTAAGAGAAAGGAAGAAATGTTATTGAGATTATCCCCGCAAATCGATGAGGTTATGATAAGCAAAGAATCTCAAAGGAAGAAACAAAGTTACAATTCTGGTTTTGTAGTTTCAACAAGTAGACTTAATGATAGTGAAATTACTATTCAGATTTCATGTTACACTGTCAACAAGATTCCATTATCAGAGATCTTACTCTGTTTAGAAAATGATGGCCTTTTGCTGCTGAATGTTTCTTCTTCTCAGACATTTGGAGGGAGGGACTTCTATAATTTGCATTTACAGGTGGATAAATCTCAGAGATTAGAATCCGATATTCTAAACGAGAAGCTCTTATCAATAATGGAGAAAATGTGA 726 0.3581 MLAISPPLFSTIGWPFEETISHNLHQNHFYKDITIDQLFDINNQVEAENSTDPSQATSCDLSMVKKLVHNASERDRRKKINNLYSSLRSLLPVSDQMKKLSIPATISRVLKYIPELQKQVEGLIKRKEEMLLRLSPQIDEVMISKESQRKKQSYNSGFVVSTSRLNDSEITIQISCYTVNKIPLSEILLCLENDGLLLLNVSSSQTFGGRDFYNLHLQVDKSQRLESDILNEKLLSIMEKM 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01824 241 CDD bHLH_AtORG2_like 65 135 - -
Trre1g01824 241 Coils Coil 113 133 - -
Trre1g01824 241 FunFam Transcription factor ORG2 60 145 - -
Trre1g01824 241 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 65 134 IPR036638 GO:0046983
Trre1g01824 241 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 64 116 IPR011598 GO:0046983
Trre1g01824 241 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 55 236 - -
Trre1g01824 241 SMART finulus 70 122 IPR011598 GO:0046983
Trre1g01824 241 Pfam Helix-loop-helix DNA-binding domain 65 117 IPR011598 GO:0046983
Trre1g01824 241 Gene3D - 60 153 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01824 Trre-Chr1 14413930 14415734 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01824 1 240 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 42.800 4.09e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g01824 HLH 3.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01824 - - gmx:100803424 256.144