Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01822 ATGCTGAATGAAACAAAGACATGTGATTCAATTAAGTACGATGATGATGGAGAAAGGATTGTGATGTTGTTTGGTGTAAACATTGCAAAAAAACCCACTAAAGTTGATGACACCATCAAGATCAGCAACAATAGCATGGAAGACATCAATTATATCCATGATGATGATGATAAGAATGAGAATTCTATTTTGGAACAAGGGAACGAGAATGAGAATAATAATAATTCCATGTCCAACAATGAAAAGATGAAAAAGGAATTTGAACAACGGAGTGAGAAGGAGAATGGGAATGACAATGACAATAACAAATTTCCAGAATTAGCTATTGTTCAAAGATCCAACCATGAAAGGATAAAAAGGGTGAAATCATGGACAGAGAAGGAGCACAAGGCTTTCTTGAAAGGTTTAAAGGCAGTTGGAAAAGGAAGATGGAAGAATATATCAAGAAACTTTGTGATAACCAAGACTCCAACTCAAGTTGCTAGTCATGCACAAAAGTATTTTCAAAGAAATGGACCAATACTCTATAGAACCAAGCGCCAAAGCATCTTTGACATGAAACTTCTTGATGATGAATGTGAAAATTCAAAGCAGCTAGTGCTTAGGTTGTGA 612 0.3529 MLNETKTCDSIKYDDDGERIVMLFGVNIAKKPTKVDDTIKISNNSMEDINYIHDDDDKNENSILEQGNENENNNNSMSNNEKMKKEFEQRSEKENGNDNDNNKFPELAIVQRSNHERIKRVKSWTEKEHKAFLKGLKAVGKGRWKNISRNFVITKTPTQVASHAQKYFQRNGPILYRTKRQSIFDMKLLDDECENSKQLVLRL 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01822 203 PANTHER TRANSCRIPTION FACTOR KUA1 4 190 - -
Trre1g01822 203 Pfam Myb-like DNA-binding domain 122 168 IPR001005 -
Trre1g01822 203 SUPERFAMILY Homeodomain-like 120 170 IPR009057 -
Trre1g01822 203 NCBIfam myb-like DNA-binding domain, SHAQKYF class 122 170 IPR006447 GO:0003677
Trre1g01822 203 MobiDBLite consensus disorder prediction 81 100 - -
Trre1g01822 203 MobiDBLite consensus disorder prediction 50 103 - -
Trre1g01822 203 SMART sant 120 170 IPR001005 -
Trre1g01822 203 MobiDBLite consensus disorder prediction 50 64 - -
Trre1g01822 203 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 172 IPR017930 -
Trre1g01822 203 MobiDBLite consensus disorder prediction 65 80 - -
Trre1g01822 203 CDD SANT 123 168 IPR001005 -
Trre1g01822 203 Gene3D - 122 174 - -
Trre1g01822 203 FunFam transcription factor MYB1R1 122 172 - -
Trre1g01822 203 ProSiteProfiles Myb-like domain profile. 123 168 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01822 Trre-Chr1 14399568 14403539 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g01822 Myb_DNA-binding 1.7e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01822 - - tpra:123891687 135.961