Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01821 ATGGTGAATGATTCAACAACGTACGATTCCATGAAGTACGATAATAATGGTGAAAGGATTGTGATGTTGTTTGGTGTCAACATCGCAAAAAATCCAACCAAAGTTGATGACACTCCAAAAGATAGCTCTAGTATGGAAAACATCAATTATATCCCTCATGACAAAAATAATATCCCCCATAACAATAAAGATATTTCTATTTTTGAAGACAATAATGAGAATGAGAATAATGAACGTTTAGACTTTGATATTGGTCAAAATTCCAAGCATGAGAAGATGAAGAGTGAATTTGAACAACGGAGTGAGAATGATAATGACAATGGTAATAACGAATATCAAGACTTGGATATTAGTCAAATTTCCAGACATGAAAAGGTGAAAAAAGTGATACCATGGACACCAAAAGAGCATAGGGCTTTCTTGAAAGGTTTAAAGGCCGTTGGAAAAGGAAGATGGAAGCATATATCCAAAAATTATGTGATGACCAAGGATCCTACTCAGGTTGCTAGTCATGCACAAAAGTTTTTTCAAAGAACTGAAATTGACCCAATGTTTAGAAACAAGCGCCAAAGCATCTTTGACATGAAACTTCTTGATGATGAATATGAAGATTCAAAAGCTTCTGGTGTTTCTTCTTCATTGGGACCATCCTCCAGAAGAAACTCTCATTAG 672 0.3497 MVNDSTTYDSMKYDNNGERIVMLFGVNIAKNPTKVDDTPKDSSSMENINYIPHDKNNIPHNNKDISIFEDNNENENNERLDFDIGQNSKHEKMKSEFEQRSENDNDNGNNEYQDLDISQISRHEKVKKVIPWTPKEHRAFLKGLKAVGKGRWKHISKNYVMTKDPTQVASHAQKFFQRTEIDPMFRNKRQSIFDMKLLDDEYEDSKASGVSSSLGPSSRRNSH 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01821 223 Pfam Myb-like DNA-binding domain 131 174 IPR001005 -
Trre1g01821 223 Gene3D - 130 181 - -
Trre1g01821 223 CDD SANT 131 176 IPR001005 -
Trre1g01821 223 MobiDBLite consensus disorder prediction 71 119 - -
Trre1g01821 223 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 123 180 IPR017930 -
Trre1g01821 223 ProSiteProfiles Myb-like domain profile. 131 176 IPR001005 -
Trre1g01821 223 MobiDBLite consensus disorder prediction 204 223 - -
Trre1g01821 223 MobiDBLite consensus disorder prediction 71 107 - -
Trre1g01821 223 PANTHER TRANSCRIPTION FACTOR KUA1 20 201 - -
Trre1g01821 223 NCBIfam myb-like DNA-binding domain, SHAQKYF class 127 178 IPR006447 GO:0003677
Trre1g01821 223 MobiDBLite consensus disorder prediction 207 223 - -
Trre1g01821 223 SMART sant 128 178 IPR001005 -
Trre1g01821 223 SUPERFAMILY Homeodomain-like 126 179 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01821 Trre-Chr1 14393948 14397788 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre1g01821 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01821 - - psat:127093981 116.701