LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre1g01820	ATGGGCTCGGTCGACAAATATCACGTGATCGAGCTAGTCGGCGAAGGTTCCTTCGGTAAAGTCTACAAAGGAAGACGCAAATACACCGGACAGACTGTTGCGATGAAGTTCATCATGAAACATGGTAAAACTGAAAAGGATATTCACAATTTGAGACAAGAAATTGAGATATTAAGGAAGTTGAAGCATGAAAATATTATCCAAATGCTTGATTCCTTTGAAACCCCACAAGAGTTTTGTGTTGTCACAGAATTCGCACAAGGTGAGCTATTTGAGATTCTTGAGGATGATAAATGCCTTCCCGAGGAACAAGTCCAAGCAATTGCAAAGCAATTGGTAAGAGCCTTACATTATTTACATTCCAACCGGATCATCCATCGTGATATGAAGCCCCAAAATATTCTTATTGGTTCCGGATCTATTGTCAAGCTTTGTGATTTTGGATTTGCACGTGCGATGTCCACAAACACAGTTGTTTTGAGATCTATAAAAGGCACTCCATTATACATGGCTCCCGAACTTGTCCGGGAACAACCTTACAACCACACTGTAGATTTATGGTCTCTTGGTGTTATATTGTATGAGTTATTCGTAGGCCAACCACCATTTTACACAAATTCTGTTTATGCTCTCATCAGACACATTGTTAAGGATCCAGTTAAATATCCTGATCATATGACTCCAAATTTCAAAAGCTTTTTAAGGGGTTTGCTTAACAAGGCACCAGAAAGTAGACTAACTTGGCCGGCTCTTCTTGAACACCCGTTTGTTAAAGAAAATAACGACAACATTGAAGTCAGGGAATTGCGTGAGATAAGTGGGTCACCAAGGGACAGCAATATAGCACAAAAGGTTGAAGCTAAAACGATTCAAACTTCAACAGGTTTGGAAGAGCATATTGCTTCACCACTTCAGAATGAAGCTCAGTTAAATGTTCCTAACATGAACAAAACCAATTCTAAAGTGCTTGATGAGTCTCCCAGATTTTCAAATCAAAATGATGTAGGCGAGTCAGGCTGCCAAAGACTGGACAGACTCGAAAGTAACTCTCGCACTGCCAAAGGTGCAAAAGTAATTGGTCAAGACAAGGAGGCATTGGAACATGTTCTGCAACCACTGAAACGATGGTCAAAGGGATCCCAAAATATTGGCAGTGATCAAGATCTTCCTGCTTCAAACCAGTCACTGAGAATTCTGTCAAATCTAGTTGCTGCCGGTGTCTTCAGTTCTATTGGACAAATTGATGAACTAATAAGCGAGCTTCTTTCGTTTATCAGATCTATTTTAGCAATGAAATCTGCTGAAGTTATTGACTTGTTAACAAAGGGTTTCTCTATCACTAAAATTTTGCTAGATAATGGTGGGAGTTCTTGTTCAAGCTCATATTTAAATCACTGGGTTGAATTGGTTGAAATTTATTCTCAGGTTGTAACTTCGATAGATGATCCATCTGGAAGAGTTCTTTACGAGTCTAGCGCCTGCATCACAGTTATTTTGTCTAAAGTTTCTCAGGTGCTTAGATCATCTCAAGTTTCAGGCTCAGAGACACTGAACGTAACAGCTAACAGAATCATAGAGCATGCGAAAACATCTGGTTTAGTAGACCAGTTGTGCCAGTGCTTAGCAACATCAGGCTCAAGTCTTATTGCTGGTTCTTCCAATATGCTACGGGCTGCTTCTGAAGCATGCAGAGCTGCCTGGTCCTTGATTAATGCACTGGACACACTTTTTAGTAAAAAAAGTGCCATTTTGTTTCCAATCAGTGCATTGCCGAGTCATTTGTTGAAGAGGACAGAAATTATGGATTACAGACAAGATCCCTTGTACGATGAAGAATCAACAAAAATGGTTGATGCAGTGACAAGAGCATTCCTGAGATCCAAAGCTGTTCAGGTTGCTGTGTACTATTGTTTTCACCAACGCATTGAGTCTGCTACGATTTGTGGTCTTCAGCTTTTGTCAAGGTGCTGCCTCCATAGTGGAATTGTTCCAGCCGTTCTTTGTGGTCTGCCCAGTTCCCTTCCTGTGACTACTGTTGTTAGTGGTGGCGGTGATGGAACAATTGTTTCCGAGATTTTCTCGGTTTTGTCAATATGCAGTTCCTCTCTCAACAAAGATGAACAAAGTGTGGAACCAAGTAACACTAAATGCAAATTAGCAAACCCTTCTGCTCTGATTCGTCATTCATGTCTTATTCTTACAATAATTGCACAATATTTGAAGTCAACAGGAAGAAATTCTGCAATTTTTATGCTCACCAACTCATCAAAGAAGCAGCTCGCTCGACTCTCAGTTCTTGCTCATCATGTTTCTTATGATGATAAAACAAAAGCCACTTTCCAACTTCAAAGTTCATCAGCCATGTTGGCTTTGGCATCCATTCTTTCGCTCGAATCTGGGACTTTGGTTGAGTCCTCAATATCTGAAATTGCTATGCCTTTAATTCCTCGAGCTTCTACACTAAGTGACCATCTAAAATTTTTATCAGGTAATGAAAATGAACCGGGCCCTGGCAATTTTACTGGGAAGCTCCCATATTGGCTAGGGGTAAGGGATGGGTGTGTTGGTCTTGTAGATTCCAAACTCAAGTGGGGGGGACCATTAGCTATTCAGCAGTTGTGTGCAAGTGGTATACCACTACTTCTAATCGGCTTATTAAGCAATGCATTTTTAAATCCTTCTCAAGAAAACGAGTGCCTAAACGATAGAGTTGGATTTTCTCCTATAGGCGTTGTCTGGACAGTTTCATCATTATGTCATTGTCTCTCTGGTGGTGCTTTGATTTTTCGTCAGATTTTGATTAGGAATGAACATGTTAAACTCGTATCCAACTTAATATGTGATGTTCATCTTAAGTTGATAAAATGCTGGACCGGACCTGGAGGAGGGAGAGTCGGGGTCAGAGATCTAATAAATGCAGTCATAGATCTCTTAGCATTTCCTTTTGTTGCTCTTCAAAATGCACCTGGCTTGCCATCAGCCACTGCATCTGTCAGCAGTGGGTTTCTTCTTAACGTTGGCTCCCCTGGTCAGAGAGTTTACATGGAAGACAAGGATACAGTTAAGGCAATAGAAGAAGACATGAGCAAATACATTAAGATCCTCGCGGAGGTTGGTGTGCCTAGTATTATCCTTCGATGCCTCGATCATATGGAGTTGCACGATTTGGGCAGGCCTGTGGCCTTTCTTGCTAAAATGGTGTGCCAACGACCTTTAGCAGTCCAACTTGTGAGTAAAGGTCTTTTGGATCCAAATAGAATGAGAAGGTTGTTTGACTTGTCGGGACCAAAAGAGGTTATGCTGGATGCTCTTATGATAATTTCCGATCTTGCTCGTATGGACAAGGGATTCTATGAGTACATTAAAGGTGCTTCTATTTTGGAGTTCTTAAAAAAATTTCTTTCACACGAGGATCCAAATGTGCGTGCCAAAGCTTGCAGTGCTCTTGGCAATATGTGTCGCCACAGTGCCCAATTTTACAGTTCTCTTGCAAGATATCAAATCATTAGTATCCTTATTGATCGATGCTCTGATCCGGACAAACGTACAAGGAAGTTTGCCTGTTTTGCTATTGGAAATGCGGCTTACCACAATGACGTGTTGTATGAAGAGTTGAGGAGTTCGATACCTCATTTGGCAAAATTGTTGCAAGTGGCAGAGGAAGACAAAACCAAGGCAAATGCTGCAGGTGCACTTAGCAATCTGGTTCGCAACTCTGACAGACTTTGTGGAGACATTGTGTCCAAAGGAGCAGTTCAGTCTCTTCTGGAGTTAATTTCCGATTATGCAGTATCAGCGCTAAATCCAAGCAGAAATGATTCAACAAACGAGTCTCCTTTAAAGATTGCTCTCTTTTCCTTGGCGAAGATGTGTGCTCATCCACTCTGCAGACAGTTCATTCGCTCATCATCTTTGTTCCATGTAATTGGACGGCTTCAGCAGTCTCCAGAATCTTCCATTGCCAAATATGCATCTGTGATCGTTAGCAAAGTTGAACCTTGA	4002	0.4128	MGSVDKYHVIELVGEGSFGKVYKGRRKYTGQTVAMKFIMKHGKTEKDIHNLRQEIEILRKLKHENIIQMLDSFETPQEFCVVTEFAQGELFEILEDDKCLPEEQVQAIAKQLVRALHYLHSNRIIHRDMKPQNILIGSGSIVKLCDFGFARAMSTNTVVLRSIKGTPLYMAPELVREQPYNHTVDLWSLGVILYELFVGQPPFYTNSVYALIRHIVKDPVKYPDHMTPNFKSFLRGLLNKAPESRLTWPALLEHPFVKENNDNIEVRELREISGSPRDSNIAQKVEAKTIQTSTGLEEHIASPLQNEAQLNVPNMNKTNSKVLDESPRFSNQNDVGESGCQRLDRLESNSRTAKGAKVIGQDKEALEHVLQPLKRWSKGSQNIGSDQDLPASNQSLRILSNLVAAGVFSSIGQIDELISELLSFIRSILAMKSAEVIDLLTKGFSITKILLDNGGSSCSSSYLNHWVELVEIYSQVVTSIDDPSGRVLYESSACITVILSKVSQVLRSSQVSGSETLNVTANRIIEHAKTSGLVDQLCQCLATSGSSLIAGSSNMLRAASEACRAAWSLINALDTLFSKKSAILFPISALPSHLLKRTEIMDYRQDPLYDEESTKMVDAVTRAFLRSKAVQVAVYYCFHQRIESATICGLQLLSRCCLHSGIVPAVLCGLPSSLPVTTVVSGGGDGTIVSEIFSVLSICSSSLNKDEQSVEPSNTKCKLANPSALIRHSCLILTIIAQYLKSTGRNSAIFMLTNSSKKQLARLSVLAHHVSYDDKTKATFQLQSSSAMLALASILSLESGTLVESSISEIAMPLIPRASTLSDHLKFLSGNENEPGPGNFTGKLPYWLGVRDGCVGLVDSKLKWGGPLAIQQLCASGIPLLLIGLLSNAFLNPSQENECLNDRVGFSPIGVVWTVSSLCHCLSGGALIFRQILIRNEHVKLVSNLICDVHLKLIKCWTGPGGGRVGVRDLINAVIDLLAFPFVALQNAPGLPSATASVSSGFLLNVGSPGQRVYMEDKDTVKAIEEDMSKYIKILAEVGVPSIILRCLDHMELHDLGRPVAFLAKMVCQRPLAVQLVSKGLLDPNRMRRLFDLSGPKEVMLDALMIISDLARMDKGFYEYIKGASILEFLKKFLSHEDPNVRAKACSALGNMCRHSAQFYSSLARYQIISILIDRCSDPDKRTRKFACFAIGNAAYHNDVLYEELRSSIPHLAKLLQVAEEDKTKANAAGALSNLVRNSDRLCGDIVSKGAVQSLLELISDYAVSALNPSRNDSTNESPLKIALFSLAKMCAHPLCRQFIRSSSLFHVIGRLQQSPESSIAKYASVIVSKVEP	1333

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre1g01820	1333	SUPERFAMILY	ARM repeat	1094	1323	IPR016024	-
	Trre1g01820	1333	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	124	136	IPR008271	GO:0004672\|GO:0006468
	Trre1g01820	1333	FunFam	Aurora kinase A	2	89	-	-
	Trre1g01820	1333	Coils	Coil	41	61	-	-
	Trre1g01820	1333	Gene3D	-	1035	1331	IPR011989	-
	Trre1g01820	1333	Pfam	HEAT repeats	1128	1232	-	-
	Trre1g01820	1333	Gene3D	Transferase(Phosphotransferase) domain 1	2	333	-	-
	Trre1g01820	1333	PANTHER	PROTEIN KINASE RELATED	4	1332	-	-
	Trre1g01820	1333	SMART	serkin_6	7	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g01820	1333	CDD	STKc_STK36	5	257	-	-
	Trre1g01820	1333	FunFam	Serine/threonine-protein kinase TIO	1061	1330	-	-
	Trre1g01820	1333	ProSitePatterns	Protein kinases ATP-binding region signature.	13	40	IPR017441	GO:0005524
	Trre1g01820	1333	Pfam	Protein kinase domain	7	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g01820	1333	SUPERFAMILY	Protein kinase-like (PK-like)	4	283	IPR011009	-
	Trre1g01820	1333	ProSiteProfiles	Protein kinase domain profile.	7	257	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre1g01820	1333	FunFam	Serine/threonine-protein kinase 36	4	322	-	-
	Trre1g01820	1333	SMART	arm_5	1238	1292	IPR000225	GO:0005515
	Trre1g01820	1333	SMART	arm_5	1197	1237	IPR000225	GO:0005515
	Trre1g01820	1333	SMART	arm_5	1114	1154	IPR000225	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre1g01820	Trre-Chr1	14380185	14391359	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre1g01820	4	246	AGC Kinase Gene Family	AT3G08730	38.367	2.65e-45	169

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	ULK_Fused	Trre1g01820		Pkinase	3.6e-77	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre1g01820	K06228		-	gmx:100792102	2140.93