Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01819 ATGGAACAACAACAAACCTTTGATTCCACCTTCACTTTTTGGTCCTCAAACATGTTACAAATTCAAAATTCAATTTTTAAAACCAAAAACATGACACAAACCTCTTTCTCCAAACCTCCAAAATCAACCTCAAATTTAAGCAATAGAAAACCATCTTTGAACATCACAATCCCTTCCATAACAAAACCTCTCCCACAACAAAAAATAATAAAAAATGAAAACACAAACACCAAAGAAGAAGATAATAATAAGCACTATAGAGGTGTTAGAAGAAGACCATGGGGAAAATTTGCTGCAGAAATTCGTGACCCTAATAAAAAAGGTTCAAGAGTATGGCTTGGAACTTTTGAAACAGCCATAGAAGCTGCAAAAGCTTATGATAAAGCTGCTTTTCAGATGAGAGGAAGTAAAGCAATAATGAACTTCCCTTTAGATGTTGCTACTGATTCTATAGAATCATCACTTTCTAGTTGTATCAAAGTTGGTGAGAAAAGACAAAGAGACGAAGAAAACTATGTTGAGATTAATAATAGTAATAAGCAAGTGAAGAAAGAAGAAGGGGTTTCAATTTGTCCTTTGACTCCTTCATGTTGGAAAGGCTTTTGGGACACTGATGTTATGGGAACTATCTTTAGTGTTCCTCCTTTGTCACCCTTATCTCCACTAATGGGATTTTGA 678 0.3466 MEQQQTFDSTFTFWSSNMLQIQNSIFKTKNMTQTSFSKPPKSTSNLSNRKPSLNITIPSITKPLPQQKIIKNENTNTKEEDNNKHYRGVRRRPWGKFAAEIRDPNKKGSRVWLGTFETAIEAAKAYDKAAFQMRGSKAIMNFPLDVATDSIESSLSSCIKVGEKRQRDEENYVEINNSNKQVKKEEGVSICPLTPSCWKGFWDTDVMGTIFSVPPLSPLSPLMGF 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01819 225 CDD AP2 84 143 IPR001471 GO:0003700|GO:0006355
Trre1g01819 225 FunFam Ethylene-responsive transcription factor 2 84 144 - -
Trre1g01819 225 SMART rav1_2 85 149 IPR001471 GO:0003700|GO:0006355
Trre1g01819 225 MobiDBLite consensus disorder prediction 32 54 - -
Trre1g01819 225 Gene3D AP2/ERF domain 84 145 IPR036955 GO:0003700|GO:0006355
Trre1g01819 225 Pfam AP2 domain 85 135 IPR001471 GO:0003700|GO:0006355
Trre1g01819 225 SUPERFAMILY DNA-binding domain 85 145 IPR016177 GO:0003677
Trre1g01819 225 PANTHER DNA-BINDING DOMAIN 42 172 IPR044808 GO:0003700|GO:0009873
Trre1g01819 225 PRINTS Ethylene responsive element binding protein signature 86 97 IPR001471 GO:0003700|GO:0006355
Trre1g01819 225 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Trre1g01819 225 Coils Coil 165 185 - -
Trre1g01819 225 ProSiteProfiles AP2/ERF domain profile. 85 143 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01819 Trre-Chr1 14374583 14375260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01819 42 225 AP2-EREBP Transcription Factor Family AT5G51190 52.850 1.50e-55 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g01819 AP2 3.4e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01819 K09286 - tpra:123891695 259.996