Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01818 ATGACAACAGCAAAAGAAACTTCAAATTTAGATCTCATACGCCATCATCTCTTAGGTGATAACATCTCTGTTAAACTTGAAAACCCTTCACCAGAATTTGATTTATATTCATATATTTCAGAAAACACAAATTTTTTCACTTTCCTTGAAGGTTATGATTTAGTAGCAGATATGGAATTCTTTGGTAACACTTCTCAAAGTGATACAAAGCCTTCAAAGGAAATAAAGAAATCAAACTCGCCGGAACCAAAACCCGAACCGATTATTAGTACTATGGTGTCTTCAAAGAAAATTAAGAAAGAAGATGAGTTTGTTGATGAAACAAGAAGATATAGAGGTGTAAGAAGAAGACCATGGGGGAAATTTGCAGCTGAGATACGTGATCCATCAAAGAAAGGAAGTAGAGTTTGGTTAGGTACATTTGATTGTGAAATTGATGCTGCAAAAGCTTATGATTCTGCTGCTTTCAGAATGAGAGGTCAAAAAGCTATATTGAATTTTCCTTTGGAAGCTGGTGTGTGTGATCCTAAGCCTAATAGTTGTGGTAGGAAAAGGAGAAGAGAAAGTGATCAAGTTGAAGCTTCAAGAAGTTCAACTTCAAGTTCATGA 609 0.3514 MTTAKETSNLDLIRHHLLGDNISVKLENPSPEFDLYSYISENTNFFTFLEGYDLVADMEFFGNTSQSDTKPSKEIKKSNSPEPKPEPIISTMVSSKKIKKEDEFVDETRRYRGVRRRPWGKFAAEIRDPSKKGSRVWLGTFDCEIDAAKAYDSAAFRMRGQKAILNFPLEAGVCDPKPNSCGRKRRRESDQVEASRSSTSSS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01818 202 SUPERFAMILY DNA-binding domain 110 170 IPR016177 GO:0003677
Trre1g01818 202 ProSiteProfiles AP2/ERF domain profile. 110 168 IPR001471 GO:0003700|GO:0006355
Trre1g01818 202 PANTHER DNA-BINDING DOMAIN 78 188 IPR044808 GO:0003700|GO:0009873
Trre1g01818 202 MobiDBLite consensus disorder prediction 63 88 - -
Trre1g01818 202 MobiDBLite consensus disorder prediction 176 202 - -
Trre1g01818 202 Gene3D AP2/ERF domain 109 170 IPR036955 GO:0003700|GO:0006355
Trre1g01818 202 SMART rav1_2 110 174 IPR001471 GO:0003700|GO:0006355
Trre1g01818 202 MobiDBLite consensus disorder prediction 179 193 - -
Trre1g01818 202 CDD AP2 118 168 IPR001471 GO:0003700|GO:0006355
Trre1g01818 202 FunFam Ethylene-responsive transcription factor 2 109 170 - -
Trre1g01818 202 PRINTS Ethylene responsive element binding protein signature 150 170 IPR001471 GO:0003700|GO:0006355
Trre1g01818 202 PRINTS Ethylene responsive element binding protein signature 111 122 IPR001471 GO:0003700|GO:0006355
Trre1g01818 202 Pfam AP2 domain 110 160 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01818 Trre-Chr1 14360932 14361540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01818 91 197 AP2-EREBP Transcription Factor Family AT5G07580 58.716 5.33e-39 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g01818 AP2 4.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01818 - - ccaj:109813158 242.662