Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01800 ATGTCTGAGCGAATATCCAATTTAGATGATGGGGATAGAAAGCTCAAACTCAAAATGAACGAGCAATCAGAGTTTAAACTTGAGAAAGAACGAAAAGCAATACCACCAATATCTACATCCAATGTTGAGGATTTATTAGCCATGAGGCTTGACATTCATACCAAGTCCACTGTCAAATTCGCAGAATTTGGTGAAAATTCACGTTCATCACAAAATGATGTGATTGAACCTTTATCTCATAATGCCACCGATGAACCTTTATCTGAGCAGGAAGTGAGGGAATTCATTTGTCATTACTGTGACAAGAAGTTCTCTACTATCCGAGCACTTGGAGGACACCAAAAAGCTCATAAGCGTGAGCGTGCCTCCGTAAAAATGGAAAAACAAAGGAAAGAAGAGGAATTCATCTCAACCATAAAATCTAGTCTTGGTCATCAACCATACCGGCCTTATCTACTTTCAAACCCTATTCTCTACCAAGATTATTTTAATTTAGGTAGTGCTAACTTGCACCGACCAATTTGTGCCCATATGAACAATATCATTCCTTCTTGGGCTACTAGTTCCCCTTATAATGGCTATGGAGGGTTGTATATGCCAAATACACCCCCCACATCACCCCATTTTGTGATGCAAATGTCAAGTTCACCCGTGGCAACACCACAATTTGGGAGGACTAACTTTTTGGGTGGACGTCAATATGTTGCATTTTCACATCCACAAAGGTCAAACACTTTGGGTTTGGAACTTGTTCAGGATAATACAACCCCTTCAATTGTTGACGGGCTAGAAAGAAATTTGAGTGCTCCATTCCGTTCTCACACTCTTGATTTGTTATCTCGTACTAATTCTATTGGAGAAGGCTTGGTACAAGAAAATCCAAACATGTCTTCAGCATCGACTCAATCAACCACGGAGGAACTCAACTTGGATCTCACCCTTTAA 945 0.4021 MSERISNLDDGDRKLKLKMNEQSEFKLEKERKAIPPISTSNVEDLLAMRLDIHTKSTVKFAEFGENSRSSQNDVIEPLSHNATDEPLSEQEVREFICHYCDKKFSTIRALGGHQKAHKRERASVKMEKQRKEEEFISTIKSSLGHQPYRPYLLSNPILYQDYFNLGSANLHRPICAHMNNIIPSWATSSPYNGYGGLYMPNTPPTSPHFVMQMSSSPVATPQFGRTNFLGGRQYVAFSHPQRSNTLGLELVQDNTTPSIVDGLERNLSAPFRSHTLDLLSRTNSIGEGLVQENPNMSSASTQSTTEELNLDLTL 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01800 314 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 122 IPR013087 -
Trre1g01800 314 Gene3D Classic Zinc Finger 77 145 - -
Trre1g01800 314 Pfam C2H2-type zinc finger 95 120 - -
Trre1g01800 314 MobiDBLite consensus disorder prediction 288 314 - -
Trre1g01800 314 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Trre1g01800 314 SUPERFAMILY beta-beta-alpha zinc fingers 93 122 IPR036236 -
Trre1g01800 314 Coils Coil 114 134 - -
Trre1g01800 314 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 43 288 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01800 Trre-Chr1 14050424 14051368 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01800 83 198 C2H2 Transcription Factor Family AT5G25160 33.621 4.68e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g01800 zf-C2H2_6 2.6e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01800 - - tpra:123892015 295.819