Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01783 ATGGCTCCTTCTTCTCCGATCAATACTGATTCGCAACCTCCTTCAACCGCAGAAAATGATCTTCAGCCATTCTTTGTTCTACATAAAGCTTCGCCTCGGAGAAAAGATAGAACACCAGTCAGACAGGGAAAATCTCGCAAGAGAAATGAGCTTTCTCCTCAACCGCCACAGAGTGAAAAGAAACGAGAAGAAAGTACAAATGAAGAATGTGATCGCCATTTGTGTCAGCAAATGCAGATTGAAGCTTTTGATATTGTTTGGACAAAAATTGAATCTACCATTAAGGATGTCTTGAGAGACCTCAATGCTAGTGTATTCAATAACATACAACAATGGGTTTTAGAGTGCTTCAATACTACTAGATTAGTTGGAGAACCTAGCATTGCTGAAGCAACTCGGTCTTTTCCTGTTCTAAATAATACTACTCCTGGGAAGTTGTACACTGCATTAGTTATTACTCGAAACATAGAGTTTGTTGATGACATAATGACATTTGAAGAGCTTGGCGTTTTCTTGAAATCCCATGGATGTCATGTAGCTATGCTTTCATCAATGGAGTTTTCGCTAAAAAATGGAATTGCTGGTTGCTTGAAAGCTTTATTGCGAGAGTTTCTAGGAGGTTCTTTTGACTCAGCTGATATATCAACCTTAGCATCATGGTATAGAGAACAAGACAACTTCAATAAACCACTAGTACTGATCGTTAATGATTTGGAAAGGTGTTGCGGATCAGTCTTAACTGATTTTATCCTGATGTTGAGTGAATGGGTTGTCAAGGTACCAATCATCTTAATATTTGGAGTTGCAACGACAGTGGATGCCCCAAGAAACATTTTTCCATCTCATGCTCTTGAGTGTTTGTGCCCTTCTACGTTTATGCTTGTAACACCAGCTGAGAGAATGGATGCAATTGTTGTGGAAGTTCTTGTAAAACATTGCACCACTTTTAATATCGGTCATAAAGTGGCACAGTTTTTGAAAAACTACTTCATCAACCAGGATGGGACAGTAACATCTTTTATAAGAGCTTTGAAGGTAGCATGCTTATTACACTTCTCTATGGAACCTTTGAGTCTTATACAAGGGAGAATTCTTGAAGATCAGGATGCAAAATCTGGATTATCACCTGAGACGATGTTGAAATACATGGATGAACTTCCATCATATGCAAGGAATAAAATGGTTGATAAGACTAAGACAAGCGTGGCTGAGGGTTTGTCAGAATTGGTGACAGTGCAGAAACTATGGAGCACTGTGGTTCTATGCCTATATGTGGCTGGAAAATATAGCAGAGTGCGGCTGCTGGATTTGTTTTGTGAAGGACTCAATCAAGTTTTGTACCCATCAAGGGATTCTGTTTGTCATACGAGGGATGAAAAAGACCATGGGTTGTCCTCAACAAATGATCCCTGTCAGCAATATTCCATCTTGCAAAGCGGAGGTTTTATTTGCCAGATAGCACGCAGAGTGAGGGATCTCCCTTCAGGAAAGCTAGATCAATTGATTGATAGTTGGGAAAAAATTACTGCAGATATTTCAGAGATTCATGATAAACTGAAAATCTTGCAATCTTCAGTAAGCTGTAAAGATGGAAAGAGTTCACGCAGGAGTTCCAAGGACATTTCCAAGAGATCTGTGTCCAAAAACATTGACAAGGACTCGAGATTGTCAAACTTGCAAGCTATCGCATTTCTTGACGATTTAGTTAGAAATTATTTGAAGCCCATTGAAGGAATGCCTTTCCATGAAATTTTCTGCTTCAACAATGTTGAGAAGCTTCAATTGGTTTTGATCGGAGATCCAAGGAGAAGGATTCAAGTTGATCTGTTGGATTTCCATGATATTTTAGGATGTAGTTGCTGCAACAAGAGTGGCAAGGCCCTATTGCCATCCATGCATGATTCCTCAATTATGTACTCGCTAGCTCAAGAACATGGAGATCTTATCAATCTTCATGATTGGTTCCAGTCATTTAGAACAATTGTTCTTCAAAATAAAAATAAACGGAAACAAAAATCGAAGAACACCCCCTTATCAAAGAAGAGAAAAGAAATGAATGGATCTGGAGACCAAAATGAAGCCTCAATTCAAGCTCGATTTTGCAGAGGAGTTACGGAGCTGCAGATCACTGGGCTAGTTCGAATGCCTAGCAAGAGACGTCCAGATTTTGTACAGAGAATAGCATTTGGAATTTGA 2196 0.393 MAPSSPINTDSQPPSTAENDLQPFFVLHKASPRRKDRTPVRQGKSRKRNELSPQPPQSEKKREESTNEECDRHLCQQMQIEAFDIVWTKIESTIKDVLRDLNASVFNNIQQWVLECFNTTRLVGEPSIAEATRSFPVLNNTTPGKLYTALVITRNIEFVDDIMTFEELGVFLKSHGCHVAMLSSMEFSLKNGIAGCLKALLREFLGGSFDSADISTLASWYREQDNFNKPLVLIVNDLERCCGSVLTDFILMLSEWVVKVPIILIFGVATTVDAPRNIFPSHALECLCPSTFMLVTPAERMDAIVVEVLVKHCTTFNIGHKVAQFLKNYFINQDGTVTSFIRALKVACLLHFSMEPLSLIQGRILEDQDAKSGLSPETMLKYMDELPSYARNKMVDKTKTSVAEGLSELVTVQKLWSTVVLCLYVAGKYSRVRLLDLFCEGLNQVLYPSRDSVCHTRDEKDHGLSSTNDPCQQYSILQSGGFICQIARRVRDLPSGKLDQLIDSWEKITADISEIHDKLKILQSSVSCKDGKSSRRSSKDISKRSVSKNIDKDSRLSNLQAIAFLDDLVRNYLKPIEGMPFHEIFCFNNVEKLQLVLIGDPRRRIQVDLLDFHDILGCSCCNKSGKALLPSMHDSSIMYSLAQEHGDLINLHDWFQSFRTIVLQNKNKRKQKSKNTPLSKKRKEMNGSGDQNEASIQARFCRGVTELQITGLVRMPSKRRPDFVQRIAFGI 731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01783 731 MobiDBLite consensus disorder prediction 666 693 - -
Trre1g01783 731 CDD Orc3 572 729 - -
Trre1g01783 731 Pfam Origin recognition complex winged helix C-terminal 602 729 IPR040855 -
Trre1g01783 731 MobiDBLite consensus disorder prediction 1 70 - -
Trre1g01783 731 MobiDBLite consensus disorder prediction 29 70 - -
Trre1g01783 731 CDD Orc3 81 360 - -
Trre1g01783 731 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 228 359 IPR045667 -
Trre1g01783 731 Pfam Origin recognition complex (ORC) subunit 3 N-terminus 59 204 IPR045667 -
Trre1g01783 731 PANTHER ORIGIN RECOGNITION COMPLEX SUBUNIT 3 16 730 IPR020795 GO:0003677|GO:0005664|GO:0006260
Trre1g01783 731 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01783 Trre-Chr1 13863593 13873019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01783 1 700 Core DNA Replication Machinery Family AT5G16690 45.404 0.0 588
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01783 K02605 - gmx:100780646 1115.91