Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01779 ATGGATGATGACTACATCATGGACATGGAAATGGACATGGATGTTCCTCTCCCTGAAGAACTCGAATTACTCGAATCAACCTATCGCATCTACGAACAACAACAAGACCAAGAAGATCACTACTTTTACCAACCACCCGAAGACGAAACCGAATTCGAACAACAACCGCCACAAGATCTAGTTTCTCCTTCCGAACCTCAGTTCAACAGCCACAAACGTTCTCGTTCGAAATCGAATTCGGATTCCGATTTGGATGATTTGGATTCTTCTGGTGTTGAAAAAAGAGAGAAAGTTAGGGTTAGGGTTGAAGATCCACCTGTTGAAGAGGATTGGCTTCGATACTCTCCTCCACCTACTACTACTACTTCAGTTGAAGAAGTGAGATTGTCTAAGGAGAAGACGTTGTCGCGATTTGCGTCGGAGATTGATGGTGAAGTTATGCCGATTACTGCGCCTAATGGAGATAGGGTTTACACTAAGCTGGATAGGTATTACGGTGAAGAACAAGTTACTAAGCTGAATTATAAAGGATATTCTTCTGATCTTGCTATAGAACCGATTAGTGTCCTGTTTGAAAGGTTGGAGCAAGAGACTTTTGCTAAGACCTTGGCAGCTAGTTCTGAAAGCCAAAGTGTTGTAGATGTTCCTGAAACACCAACAGTCAGTGAAAAACTTTGGGTTGAAAAATATGCTCCAAAGTCGTTTACTGATCTTCTTAGTGATGAACAGACAAATCGTGAGGTACTCTTGTGGTTAAAACAATGGGATTCTACCGTGTTTGGATCTGAAATACGAAGCACATCAGACGACGTTTTGTCTGCTTTGAAACGGCATTCTTCTATTTCCCATAAACCGAAACCTATGGGTTCAAATTTCCCAAGAACAAATGGAGGGCACAATTGGAGTAGTAACAGGTATACAAATTCTAGAAGTACGGTGGAGAGTGGAAATTCGACGAGTATTCAGGATACACGCAATACAAAGTCACGGAATATTGGCGCACCAGAACAGAAGATCCTTCTGCTATGTGGACCACCAGGTCTCGGAAAAACAACACTTGCACATGTAGCTGCTAGACATTGTGGATATCACGTGGTAGAGGTTAATGCTAGTGATGATCGTTCTACATCAACAATTGAAGCAAAAATCCTTGATGTGGTTCAGATGAACTCTGTCTTGTCTGATTCAAAGCCAAAGTGTCTGGTGGTGGATGAAATTGATGGAGCCCTTGGGGATGGAAAAGGTGCTGTGGAGGTTCTTTTAAAGATGATTTCTGCTGAAAGGAAGCCTGATGCAGGGAAGCAAAGTTTTGATAAAGGACAAATGGAAAGGAAATCATCAAAGAAGGGGCGAAAAACTGCATCCCTGTCAAGACCTGTGATTTGCATATGTAATGACCTTTATGCACCTGCCTTAAGATCATTACGCCAAGTGGCCAAGGTTCATATATTTGTTCAACCAACGGTTAGTCGGGTGGTAAGCAGACTAAAATATATATGTAACAAGGAGGGGGTCAAAGCCAGTGCCATTGCACTCACTGCTTTAGCGGAATATACAGCATGTGATATACGCTCATGCTTGAACACTCTCCAATTTCTCTCTAAGAAGAAAGAAACCCTCAATGCGTTTGATATTGGTTCGCAAGTTGTTGGTCAGAAGGACATGTCAAAGAATGTTCTGGACATCTGGAAAGAGTTGTTCCAAAGAAAAAGAACAAAAAAGATGGAAAGAAAATCTCATAATAGCAAATTCTCTGAATTTGATACCTTGTACTCCCTGATATCATACCGTGGTGATAGTGACCTCATTCTGGATGGAATTCATGAAAATATTCTGCAGCTCAATTATCATGATCCAGTTATGCAGAAAACTGTCAAGTGCCTCAATAGTCTTGAAGTTTATGATCTGTTGCATCAGTATATAATGCGCACACAACAAATGCCTCTCCTTGTTCATTTACCTCCCATAGCAATTATTGTACATCATACAGTAGCTCAAGTTCAGAAGCCAAACATTGAGTGGCCAAAGTCATATCACAGGTATCGAACAACGATGATGGAAAAGATGGACATTTTGAATACTTGGCACCACAAAATATCGCCACATATTGCAAGGCACTTATCACCTGCTTCCTTTGTTGAGGACTTAATTTCTCCATTGTTGGATATTCTGTCCCCACCAACCATAAGACCGGTGGCATTACAACTACTATCGGATAAGGAGAAGAATGATATTGCTCAATTAGTTAGCACAATGGTCTCATATGCTATCACATATAAGAAAATGAAATCAGATGCACTGCCTAATACCCTGAAGTATGAAGTAGCAGATGAATTGTCTTTGTCTCTTGTTCCTTCTATCGGTAACTTTATAAACTTTAAGGATTATACTTCAAACCATTACATGCTTTCTTTACCTATGAAGCAAGTTTTGGTGCATGAAGTTGAAAAGCATAAGATTTTACAAGCTAATGCTAAAACTGCGACTTTAGCAAATGGAGGGAATGAAGTTAACGAGGCTGGAAATAACATCATATTTGCAAATACCAAGAATCATGCAGCTGTAGTTGATATGAAAACCATAGAAAGTCAAACTAATGTTTTAGCAAGGAAATCAAATGAATATCCCAAGACAGTTTCACCAAACTTGAATCTCACTAAAATTGCAAATGCAACAGACGGTGCAAAACTTCTAGACATGGGAAATAAGAAAAAACCATCTAGGAGTTCCTCAAGTTTCTTCGACAGGTTTAAAAAGTCAAGTGTTAAGGGACTCCAAAATGATGACAGATCTCTACAGAAAGAAACTACATCAGAGAAAGCTCAAAGCCCTTTACTTTTTAAATTTAATGAGGGTTTTACGAATGCAGTCAAAAGACCTGTTCGAATTCGTGAATTTCTGTCCTAG 2907 0.3977 MDDDYIMDMEMDMDVPLPEELELLESTYRIYEQQQDQEDHYFYQPPEDETEFEQQPPQDLVSPSEPQFNSHKRSRSKSNSDSDLDDLDSSGVEKREKVRVRVEDPPVEEDWLRYSPPPTTTTSVEEVRLSKEKTLSRFASEIDGEVMPITAPNGDRVYTKLDRYYGEEQVTKLNYKGYSSDLAIEPISVLFERLEQETFAKTLAASSESQSVVDVPETPTVSEKLWVEKYAPKSFTDLLSDEQTNREVLLWLKQWDSTVFGSEIRSTSDDVLSALKRHSSISHKPKPMGSNFPRTNGGHNWSSNRYTNSRSTVESGNSTSIQDTRNTKSRNIGAPEQKILLLCGPPGLGKTTLAHVAARHCGYHVVEVNASDDRSTSTIEAKILDVVQMNSVLSDSKPKCLVVDEIDGALGDGKGAVEVLLKMISAERKPDAGKQSFDKGQMERKSSKKGRKTASLSRPVICICNDLYAPALRSLRQVAKVHIFVQPTVSRVVSRLKYICNKEGVKASAIALTALAEYTACDIRSCLNTLQFLSKKKETLNAFDIGSQVVGQKDMSKNVLDIWKELFQRKRTKKMERKSHNSKFSEFDTLYSLISYRGDSDLILDGIHENILQLNYHDPVMQKTVKCLNSLEVYDLLHQYIMRTQQMPLLVHLPPIAIIVHHTVAQVQKPNIEWPKSYHRYRTTMMEKMDILNTWHHKISPHIARHLSPASFVEDLISPLLDILSPPTIRPVALQLLSDKEKNDIAQLVSTMVSYAITYKKMKSDALPNTLKYEVADELSLSLVPSIGNFINFKDYTSNHYMLSLPMKQVLVHEVEKHKILQANAKTATLANGGNEVNEAGNNIIFANTKNHAAVVDMKTIESQTNVLARKSNEYPKTVSPNLNLTKIANATDGAKLLDMGNKKKPSRSSSSFFDRFKKSSVKGLQNDDRSLQKETTSEKAQSPLLFKFNEGFTNAVKRPVRIREFLS 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01779 968 CDD AAA 335 429 - -
Trre1g01779 968 SMART AAA_5 336 490 IPR003593 GO:0016887
Trre1g01779 968 MobiDBLite consensus disorder prediction 431 452 - -
Trre1g01779 968 MobiDBLite consensus disorder prediction 431 450 - -
Trre1g01779 968 MobiDBLite consensus disorder prediction 32 47 - -
Trre1g01779 968 MobiDBLite consensus disorder prediction 280 330 - -
Trre1g01779 968 MobiDBLite consensus disorder prediction 70 101 - -
Trre1g01779 968 FunFam Chromosome transmission fidelity protein 18 487 554 - -
Trre1g01779 968 Pfam ATPase family associated with various cellular activities (AAA) 340 466 IPR003959 GO:0005524|GO:0016887
Trre1g01779 968 CDD HLD_clamp_RFC 487 545 - -
Trre1g01779 968 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN 11 967 - -
Trre1g01779 968 MobiDBLite consensus disorder prediction 26 101 - -
Trre1g01779 968 MobiDBLite consensus disorder prediction 55 69 - -
Trre1g01779 968 Gene3D - 223 485 IPR027417 -
Trre1g01779 968 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 224 541 IPR027417 -
Trre1g01779 968 Gene3D - 487 557 - -
Trre1g01779 968 MobiDBLite consensus disorder prediction 293 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01779 Trre-Chr1 13836762 13850578 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01779 334 534 Core DNA Replication Machinery Family AT5G22010 31.944 2.87e-14 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01779 K11269 - gmx:100791474 1305.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01779 1 13836762 13850578 Trre1g01779 1 13836762 13850578 ECH