Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01777 ATGAATCTTTCTGGAACTTTAAATGCTAGCATTGGAGGACTTACCAATTTAACTTATCTCAATCTTGCTTACAATAGTCTTATTGGAAATATCCCTAAGGAGATTGGTGAGTGTTTGAGTTTAGAATATCTTTACTTGAACAATAATCAATTCGAGGGACCGATTCCTGTTGAATTGGGGAAACTGTCCCTTTTGAGAAATTTGAATATTTGCAACAATAAACTCTCCGGTGTTATTCCGGACGAGTTTGGAAAGTTGAGTTCATTGGTTGAGTTAGTTGCTTATAGCAACTTTCTCGTTGGCCCTTTGCCGAATTCGGTTGGAAATCTTAAGAATCTTGCGACTTTCAGAGCTGGTGCGAATAACATTACTGGTAAGTTGCCGAAGGAAATTGGCAGATGTAAGAGTTTGGTACGTCTTGGTCTTGCTCAAAATCAGATCGAAGGGGAGATACCGAGCGAGATTGGGATGCTCGAAAGATTAAAAGAATTGGTTTTATGGGAAAACCAGTTGTCAGGAGTTGTTCCTAAAGAGATTGTGAACTGTAGCAGGCTCGAGATCCTTGCTTTATACGGGAATAATCTCATTGGGCCGTTACCTCGTGAGATTGGGAACCTGAAATCGTTGAAGTGGTTGTATCTTTACAGGAATAAGTTGAATGGATCCATTCCAAAGGAAATTGGAAATCTTTCTTCAGCCTTACACATTGATTTCTCGGAGAACTCTTTAGGCGGAAATATCCCTTCAGAGTTCAGCAAAATTCGAGGTCTAAGTTTGCTCTTTCTCTTTGAGAACCATTTAACCGGTGTTATACCAAATGAGTTTGGTAGTTTGAAGAACCTGACAAAGCTGGACCTGTCGATAAATAACATCACGGGTCCGATTCCTCATGGCTTCCAATATTTGACTCATATGTCTCAGTTGCAACTTTTCGACAACTCCTTAAGCGGTACCATTCCTCAGGGACTTGGACTTCATAGTCGTCTTTGGGTGGTTGATTTTTCTGACAACAACTTGACAGGAAATATACCTCCTCATCTATGCCAAAACTCTCATTTGATGATGTTGAATGTGGCAAATAATCAGCTTTACGGAAACATACCGACAGGGATATTGAAATGTGAATCGTTGGCGCAGTTGCTGTTGGTCGGTAACAAGCTTACTGGTGGCTTCCCTTCGGAATTGTGTAAACTGGAGAATCTAACTGCCATTGATTTGAGTGATAACAGGTTCAGCGGTCCACTTTCTCGTGAGATCGTAAACTGCCACAACTTGCAAAGGCTTCACATTGCGAACAATTACTTCACATTGGCGTTGCCGAAAGAAATAGGAAATCTCTCTCAATTGGTGACTTTTAATGTTTCATCAAATCATTTCACCGGAAGAATCCCACCAGAAATTTTTTGGTGCCAAAGGCTGCAGCGGCTCGATCTCAGTCAGAATCGTTTTACCGGTTCTTTACCAAATGAACTTGGAACACTTCAGCACTTGGAGATTCTCAAGCTCTCAAACAATAACTTGTCGGGAAATATTCCTCCAGCATTAGGCAATCTGTCTCATTTGAACTGGTTGCGGATGGATGGTAATTTGTTTTTCGGTGAAATACCTCCTGAGTTAGGTTCTCTTTCGAGCTTACAGATTGAAATGGATCTCAGTTACAATAATCTTTCTGGAAGAATACCATCTCGGCTTGGCAATCTCAATATGCTTGAAACTCTCTTTCTCAATAACAACCATTTGGAAGGTGAAATTCCAAGTACGTTTAGCGCGCTTTCAAGCTTGATGGGGTGTAATTTCTCATACAATAACCTCTCCGGACCTATCCCTTCCACTAAAATTTTCGAAAGTATGGCTTTGAGCAGCTTTGTTGGTGGTAACATAGGCCTTTGTGGTACACCTCTCATTGACTGCAATAGCATTTCAGCTTCTCGTTTGATTCCTCCCGGAAAAGACGTTGATTCTCCTCGTGCTAAACTTGTCATGATCATTGCAGCTACTGTCGGCGGTGTTTCTCTCATTTTGATTTTAGTTATTTTATATCTTATGAGACAACCTCGAGAGGCTGTTGATTCATTTGCAGACACTGAAACTCAATCCCCGGATTCAGATATCTATTTCCCTCCAAAGGACGGTTTCACGTTCCAAGACTTACTTGAAGCTACAAAAAGATTTCATGAAAGTTATGTCATTGGTAGCGGAGCATGTGGAACAGTTTATAAGGCGGTTATGAAATCTGGTAAGACCATTGCTGTTAAGAAGTTAGCATCAAACCGGGAGGGGAACAACGTCGATGATAGTTTCAGGGCTGAAATATCGACTCTAGGAAGGATCAGGCATCGGAATATAGTGAAGCTGTATGGTTTTTGCTATCACCAAGGTTCTAATCTCTTACTTTATGAATACATGGAAAGAGGTAGCTTAGGTGAATTATTGCATGGTTCTGCAAGTAATTTGGAGTGGCCGACTCGATTCATGATTGCTCTTGGAGCTGCTGAAGGTCTTGCTTACTTGCATCATGATTGTAAACCGAAGATTATTCACCGTGACATAAAATCTAACAACATTCTTCTTGATGAAAATTTTGAGGCCCATGTTGGCGATTTCGGTTTGGCAAAAGTGATTGACATGCCTCAGTCCAAATCGATGTCTGCAGTTGCCGGATCTTATGGTTATATTGCTCCTGAATATGCATATACCATGAAGGTTACAGAGAAATGCGACATATATAGTTACGGTGTTGTGCTCTTGGAATTGCTAACCGGAAAAACACCAGTTCAACCAATGGAGCAAGGAGGTGATCTTGTCACATGGACAAGAAACCATATTAGGAACAATAACAATACATTGAGCTCAGAGATGCTCGACAATCGTCTAGATCTCGAAGACCAAATAACTATAAATCACATGCTCACTGTTTTGAAACTCGCTTTAATGTGCACAAGTATGACTCCTACTAAGAGACCATCAATGCGCGAAGTTGTGTTGATGCTCATCGAGTCAAATGAACAAGAAGGAAACTTAACACTCACTCAAACAAATCATGACCCTCCTTCCAAAGATAGCACATGA 3069 0.4083 MNLSGTLNASIGGLTNLTYLNLAYNSLIGNIPKEIGECLSLEYLYLNNNQFEGPIPVELGKLSLLRNLNICNNKLSGVIPDEFGKLSSLVELVAYSNFLVGPLPNSVGNLKNLATFRAGANNITGKLPKEIGRCKSLVRLGLAQNQIEGEIPSEIGMLERLKELVLWENQLSGVVPKEIVNCSRLEILALYGNNLIGPLPREIGNLKSLKWLYLYRNKLNGSIPKEIGNLSSALHIDFSENSLGGNIPSEFSKIRGLSLLFLFENHLTGVIPNEFGSLKNLTKLDLSINNITGPIPHGFQYLTHMSQLQLFDNSLSGTIPQGLGLHSRLWVVDFSDNNLTGNIPPHLCQNSHLMMLNVANNQLYGNIPTGILKCESLAQLLLVGNKLTGGFPSELCKLENLTAIDLSDNRFSGPLSREIVNCHNLQRLHIANNYFTLALPKEIGNLSQLVTFNVSSNHFTGRIPPEIFWCQRLQRLDLSQNRFTGSLPNELGTLQHLEILKLSNNNLSGNIPPALGNLSHLNWLRMDGNLFFGEIPPELGSLSSLQIEMDLSYNNLSGRIPSRLGNLNMLETLFLNNNHLEGEIPSTFSALSSLMGCNFSYNNLSGPIPSTKIFESMALSSFVGGNIGLCGTPLIDCNSISASRLIPPGKDVDSPRAKLVMIIAATVGGVSLILILVILYLMRQPREAVDSFADTETQSPDSDIYFPPKDGFTFQDLLEATKRFHESYVIGSGACGTVYKAVMKSGKTIAVKKLASNREGNNVDDSFRAEISTLGRIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGSASNLEWPTRFMIALGAAEGLAYLHHDCKPKIIHRDIKSNNILLDENFEAHVGDFGLAKVIDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGKTPVQPMEQGGDLVTWTRNHIRNNNNTLSSEMLDNRLDLEDQITINHMLTVLKLALMCTSMTPTKRPSMREVVLMLIESNEQEGNLTLTQTNHDPPSKDST 1022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01777 1022 Pfam Protein kinase domain 725 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01777 1022 SMART LRR_typ_2 206 230 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 14 38 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 302 326 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 278 301 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 158 182 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 62 85 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 398 422 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 446 470 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 494 518 IPR003591 -
Trre1g01777 1022 SMART LRR_typ_2 567 590 IPR003591 -
Trre1g01777 1022 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 689 801 - -
Trre1g01777 1022 FunFam Piriformospora indica-insensitive protein 2 7 103 - -
Trre1g01777 1022 Pfam Leucine rich repeat 256 315 IPR001611 GO:0005515
Trre1g01777 1022 Pfam Leucine rich repeat 160 219 IPR001611 GO:0005515
Trre1g01777 1022 Pfam Leucine rich repeat 472 530 IPR001611 GO:0005515
Trre1g01777 1022 SUPERFAMILY RNI-like 235 611 - -
Trre1g01777 1022 Gene3D Phosphorylase Kinase; domain 1 690 801 - -
Trre1g01777 1022 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 104 197 - -
Trre1g01777 1022 Gene3D Ribonuclease Inhibitor 262 372 IPR032675 -
Trre1g01777 1022 SMART serkin_6 724 997 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01777 1022 SUPERFAMILY Protein kinase-like (PK-like) 701 997 IPR011009 -
Trre1g01777 1022 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 198 302 - -
Trre1g01777 1022 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 802 1014 - -
Trre1g01777 1022 Gene3D Transferase(Phosphotransferase) domain 1 802 1016 - -
Trre1g01777 1022 SMART LRR_sd22_2 494 520 - -
Trre1g01777 1022 SMART LRR_sd22_2 398 424 - -
Trre1g01777 1022 SMART LRR_sd22_2 206 232 - -
Trre1g01777 1022 SMART LRR_sd22_2 14 33 - -
Trre1g01777 1022 SMART LRR_sd22_2 278 304 - -
Trre1g01777 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Trre1g01777 1022 SUPERFAMILY RNI-like 2 316 - -
Trre1g01777 1022 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 326 641 - -
Trre1g01777 1022 ProSiteProfiles Protein kinase domain profile. 724 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre1g01777 1022 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 257 998 - -
Trre1g01777 1022 Gene3D Ribonuclease Inhibitor 1 118 IPR032675 -
Trre1g01777 1022 Gene3D Ribonuclease Inhibitor 119 261 IPR032675 -
Trre1g01777 1022 Gene3D Ribonuclease Inhibitor 373 641 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01777 Trre-Chr1 13814209 13817690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01777 29 999 Receptor kinase-like Gene Family AT4G26540 38.563 0.0 609
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Trre1g01777 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01777 - - gmx:100805792 1675.99