Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01751 ATGGAGGAGGATATGAACATTGTTGATATAGTTGATGTTCCTGATACCCCAGATAGACCGAAAGCTCGAAACAATGCCAAAAAATGTGTAGGTGAAATAAGTAACTACAACAACTATATAATATTGTCTCCGGGTCCGGATGATAAACCTTATCCATCTCAAAATGCTCCCATATTTCGGAGAGCACAAGCTGAGAAAGTTTATGGAATTGGGACATCACACTCTAATGGAGCTGAAAAGATGGAGAAAGGGAAAACTGTAAGCTCCAAGGTTTCTTCTAGGTCATCTCACCATGGGCATTTTTCTGTTTTCGATTTGACTGAAAAGAATGGGCAGTTCCAACAACCAAAACCATCTTTCTCACATCGTGGATCAAGAGATAACACAATTGAAGACAAGAAAGAAGTGAAAGCAAGTATTGGGAATTCTTCGTCACCCTTAATCACTAGTTCTTCTAATACATCCAGAAATGCCGTCACCGGAAAGTATGAACCAGATAACAAAACACTTCAAATTCCTAAAATGTTTATGGACCGTGGCAAGAGCATTGCTCTGCCCAATGATTCTCAATCTCAACTGAAAGTTGAAAATCAACTTCCTTTGCCTTCTCGTGTTACCACTGCAACAAGAGGTAGAGGGCACAAGAGATTGGTACGAAATGGGTGCATTTCGCCACATAATATTGCAACGAGGGCAAAACAATCAGCTGAACAGAGCAGCCCTCAAACCAATGATGTTGAACAGATCTTTGCTGGAAATTCAGTTTCTAACAATACAATGTCTCCGATTAGTGTTGATGATATTGTTGCTGAAGAGAGAGGCGGCGGCAGAGTTAAAGGAAAGGGAGTGCTTATTCATCCTTCACATGGAGCTAGTGCTAGAACTATTCACACTGATAGCAGCCCTGTGGTCAATTATGAAGAGGCCAGTGGCAGCAGTAATAAACCAATAAATTTAGTTGGAAACTTGGATAGACAAAGTGGTTGGAGAACTACACATAATGATGTGAATGGGCATCATTCACGGAGAAGTTTCAACGAAAAATTTATTCACAGACAGAATATGAACAGTATAGAAAGAAGTGACACTGGGAGCAGTCAAAATGGCAAGGATGTAGGTCAGTCTGCTGGACCTAGTACTATTGCTGACTCACTGACTAAAAGGCAAAGGAAGCGGGAATCATCTTCTAGAAATCCTAATGTAGCATCTCATAATTCTGAAACTGTATTCGTCAATTCGTCTGGGGAATCATCAAGTTCATCCCGAAGCCGTGTCCTGGATCCTGAATTAGTTGAGTTGTTATCCAGATCAAGTTCCACCAACGGACTGAATGAAGGTTTAAATGACAATGACAACAATAGTTCGGTTGCTCGGGCAATGCAATTAGAAGCAGATGAGATGTTGGCACGTGAACTCCAAGAACAGATGTACAATGATGATTATTTTGAAGACAGTTGGATTGATGAACATATAGCACGGGAGCTGCAGGATGAAGCGGATCTTCTGCACACATCTACTGTTAATAATCAGATACCTCATCCTTCATGGGCTCCGAGGGAAAATAGACAGCCCCGTTCACGACCACAACAAAATCCTTCAAATAGGAGGAGAACTGTGCCTCAAGTTCCTCTCTCTAATAGAACCTCACAGTTGAGGAGTCGCGTGATTACTCGATCGTCAAGGCCTACCATGTCATCTAGAGGAAGAGGAAGAGGACGAGGAAGAGGAAGACTCCCCCGGTTTCCTCTAGATATGGACCTAGACATGAGACTTGATATATTGGAAGCATTAGAAGATGCAGTAGGGGATTTTAATGATATGGGAATGGGAGATGATATCCTTAATGCTCATCGTGATTTCAATGAAGATGATTATGAAATGTTATTGGCCCTTGATGACCAAAATCACCAGCATACTGGTGCATCTACCAATCTGATCAATAGCTTGCCACAGTCCACTGTCCAGACTGACAACTTCACAGAGGACTGTGCCGTATGTCTAGAGACCCCTGCCAGGGGAGAAATTATTCGCCACCTTCCTTGTTTGCATAAATTTCACAAAGATTGTATTGATCCTTGGCTTAGTAGGAAAAGGTCGTGCCCGGTGTGCAAGTCATCTATCACCTAA 2127 0.4208 MEEDMNIVDIVDVPDTPDRPKARNNAKKCVGEISNYNNYIILSPGPDDKPYPSQNAPIFRRAQAEKVYGIGTSHSNGAEKMEKGKTVSSKVSSRSSHHGHFSVFDLTEKNGQFQQPKPSFSHRGSRDNTIEDKKEVKASIGNSSSPLITSSSNTSRNAVTGKYEPDNKTLQIPKMFMDRGKSIALPNDSQSQLKVENQLPLPSRVTTATRGRGHKRLVRNGCISPHNIATRAKQSAEQSSPQTNDVEQIFAGNSVSNNTMSPISVDDIVAEERGGGRVKGKGVLIHPSHGASARTIHTDSSPVVNYEEASGSSNKPINLVGNLDRQSGWRTTHNDVNGHHSRRSFNEKFIHRQNMNSIERSDTGSSQNGKDVGQSAGPSTIADSLTKRQRKRESSSRNPNVASHNSETVFVNSSGESSSSSRSRVLDPELVELLSRSSSTNGLNEGLNDNDNNSSVARAMQLEADEMLARELQEQMYNDDYFEDSWIDEHIARELQDEADLLHTSTVNNQIPHPSWAPRENRQPRSRPQQNPSNRRRTVPQVPLSNRTSQLRSRVITRSSRPTMSSRGRGRGRGRGRLPRFPLDMDLDMRLDILEALEDAVGDFNDMGMGDDILNAHRDFNEDDYEMLLALDDQNHQHTGASTNLINSLPQSTVQTDNFTEDCAVCLETPARGEIIRHLPCLHKFHKDCIDPWLSRKRSCPVCKSSIT 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01751 708 MobiDBLite consensus disorder prediction 289 425 - -
Trre1g01751 708 ProSiteProfiles Zinc finger RING-type profile. 663 704 IPR001841 -
Trre1g01751 708 CDD RING-H2_PA-TM-RING 662 704 - -
Trre1g01751 708 SUPERFAMILY RING/U-box 662 707 - -
Trre1g01751 708 MobiDBLite consensus disorder prediction 506 566 - -
Trre1g01751 708 MobiDBLite consensus disorder prediction 139 164 - -
Trre1g01751 708 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 708 IPR013083 -
Trre1g01751 708 MobiDBLite consensus disorder prediction 293 334 - -
Trre1g01751 708 MobiDBLite consensus disorder prediction 107 123 - -
Trre1g01751 708 MobiDBLite consensus disorder prediction 124 138 - -
Trre1g01751 708 MobiDBLite consensus disorder prediction 356 384 - -
Trre1g01751 708 MobiDBLite consensus disorder prediction 335 355 - -
Trre1g01751 708 MobiDBLite consensus disorder prediction 506 579 - -
Trre1g01751 708 FunFam RING/U-box superfamily protein 628 708 - -
Trre1g01751 708 Pfam Ring finger domain 662 704 IPR001841 -
Trre1g01751 708 MobiDBLite consensus disorder prediction 398 425 - -
Trre1g01751 708 MobiDBLite consensus disorder prediction 106 166 - -
Trre1g01751 708 SMART ring_2 663 703 IPR001841 -
Trre1g01751 708 PANTHER SI:CH211-59O9.10 327 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01751 Trre-Chr1 13541943 13546575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01751 8 708 C3H Transcription Factor Family AT1G04790 32.063 3.33e-78 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01751 - - tpra:123897569 1159.05
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01751 1 13541943 13546575 Trre1g01751 1 13541943 13546575 ECH