Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01740 ATGGATCCCCTTGCTTCTGTGGATGATCTTTTGGATTTCTCATCTGACATAGGTGAGGATGATGATGATGATGAAAAACCTAAGAAAGACATTCCTTCACTTGATCCGAAATGCAGTGATCCACCATCACTTAGTCCGTTGGGCCTGGATGATCCTAACCAATCATTTCCTGAGTATGCAGAAGAGGAGCTTGAATGGCTATCGAACAAAGATGCATTTCCGGCTGTTGAAACATTTGTTGACATATCCTGTATTCAACCGGATATGTCGAAATATCAAAAGACAACCCCAATGCTGGAGAACAGCACAAGCAGTAGCAACAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCATATGAAGTTCCCTGTTCGTGCAAGGAGCAAGTCTTGTAGTAAGCCTCGCGTTGTTGACACCTTGAACCAGCAATTCCCATGGAAACAACCAAGTAACAAAGTTTCCAGAGAACCACTGAAACAAACCTCAAACATTGGGAGGAAATGTCATCACTGCGGAGCTGATAATACTCCACAATGGCGTGCAGGTCCCGATGGTCCTAAAACCCTCTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTGCCTGAATACCGCCCTGCAAATAGCCCAACTTTTCGCCGTGAAGTTCATTCTAATTCCCACAGGAAAGTACTGGAGATGAGGAGGCAGAAGGGAATGGGATGA 726 0.449 MDPLASVDDLLDFSSDIGEDDDDDEKPKKDIPSLDPKCSDPPSLSPLGLDDPNQSFPEYAEEELEWLSNKDAFPAVETFVDISCIQPDMSKYQKTTPMLENSTSSSNNSNNSSNSITLLSGYNHMKFPVRARSKSCSKPRVVDTLNQQFPWKQPSNKVSREPLKQTSNIGRKCHHCGADNTPQWRAGPDGPKTLCNACGVRYKSGRLVPEYRPANSPTFRREVHSNSHRKVLEMRRQKGMG 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01740 241 SMART GATA_3 167 217 IPR000679 GO:0006355|GO:0043565
Trre1g01740 241 ProSiteProfiles GATA-type zinc finger domain profile. 167 203 IPR000679 GO:0006355|GO:0043565
Trre1g01740 241 ProSitePatterns GATA-type zinc finger domain. 173 198 IPR000679 GO:0006355|GO:0043565
Trre1g01740 241 MobiDBLite consensus disorder prediction 97 117 - -
Trre1g01740 241 FunFam GATA transcription factor 164 241 - -
Trre1g01740 241 Pfam GATA zinc finger 173 206 IPR000679 GO:0006355|GO:0043565
Trre1g01740 241 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 231 - -
Trre1g01740 241 CDD ZnF_GATA 172 221 IPR000679 GO:0006355|GO:0043565
Trre1g01740 241 Gene3D - 166 220 IPR013088 GO:0006355|GO:0008270
Trre1g01740 241 PANTHER GATA TRANSCRIPTION FACTOR 7 239 - -
Trre1g01740 241 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01740 Trre-Chr1 13475431 13477053 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01740 1 237 C2C2-Gata Transcription Factor Family AT3G24050 41.791 7.18e-46 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre1g01740 GATA 1e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01740 - - psat:127090991 346.665