Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01734 ATGGAGGAGGAATATTGTGTCAAGACACGGCAATATTTTTCTTTGTTACCAATACAGTTTGTCCCGTGTGATTCTTCAACCTATCTTAACAAAGAAACTATTTCATCCCATATATATTTCAATATCCAATTTGATTATATATTTCATGGATCTTTTGGAGCTAATCGACGTCACGCTCTTTATAACGTGTCACTGGAGCAATTGATGCAAGAAACAACCTTTGTATCACTGTTTTCTAAATGTAATGTTCGTAAAGATGCTTTTAAGTTAGTGTTTGATCAAATATGTAAATGTGCTAATGATATGCTTAGTGGGGAATACGAGGACCTAAGTGTTCTTACTATTCGAGTTGACTTAGTTGTTACGAGGCCTGATGATGAAGAGGAAGAGGAAGAGGAAATGGAGGTTGAAGCACAAGATGAAGATAGTGAGTTGGTTCCTGCTATTTCAAGGGCTATGAAGGCTGAAAGTTGTGAAGGCGAAGAGAACATGTGTTTGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAACTAATGAGTTGGTTCCTGCTAGGGCTATTGAATGTGAAAGTTATGAAGTTGATTATGAAGACTATTCCGGCCATGGTGGCAACGATGGTTTGGATGAGGATGAAGAGGAAATGGAGGAAGAAGAAGAAGAGGATAATGAGTTGGTTCCTGCTATTACAAGGGCTAGTGAGGGTGAAAGTTATGAAGTTGATTACGAAGACAATTACGGCTATGAAGACATCGATGGTTTAGAAGAGGATGAAGAGGAGATGATGGTTGAAGAAGAAATTAATTGGTTTATTCCTGCGGATAAGTCTTGTATCGAGGAATTGGAGATGGTAAAAGTTGACGAAGTTGCAAAGTGTGTAATTTGTTTCGAAGATTTTAATGTCGGTGTCCGATTGCCATGTTCGCATATGTTTCATGCGAATTGTATTCAAGATTGGTTGGTCGTAGGCAACTCTTGCCCCTTGTGTAGGTTCCAATTGCCTACTGCAAACGCTAGTTTATAA 1053 0.3837 MEEEYCVKTRQYFSLLPIQFVPCDSSTYLNKETISSHIYFNIQFDYIFHGSFGANRRHALYNVSLEQLMQETTFVSLFSKCNVRKDAFKLVFDQICKCANDMLSGEYEDLSVLTIRVDLVVTRPDDEEEEEEEMEVEAQDEDSELVPAISRAMKAESCEGEENMCLEEEEEEEEEEEEEEEEEEEEETNELVPARAIECESYEVDYEDYSGHGGNDGLDEDEEEMEEEEEEDNELVPAITRASEGESYEVDYEDNYGYEDIDGLEEDEEEMMVEEEINWFIPADKSCIEELEMVKVDEVAKCVICFEDFNVGVRLPCSHMFHANCIQDWLVVGNSCPLCRFQLPTANASL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01734 350 ProSiteProfiles Zinc finger RING-type profile. 302 340 IPR001841 -
Trre1g01734 350 SUPERFAMILY RING/U-box 301 345 - -
Trre1g01734 350 MobiDBLite consensus disorder prediction 162 189 - -
Trre1g01734 350 MobiDBLite consensus disorder prediction 206 235 - -
Trre1g01734 350 MobiDBLite consensus disorder prediction 124 142 - -
Trre1g01734 350 Pfam Ring finger domain 301 340 IPR001841 -
Trre1g01734 350 Coils Coil 215 235 - -
Trre1g01734 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 283 349 IPR013083 -
Trre1g01734 350 MobiDBLite consensus disorder prediction 123 193 - -
Trre1g01734 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 169 344 - -
Trre1g01734 350 MobiDBLite consensus disorder prediction 217 234 - -
Trre1g01734 350 Coils Coil 158 191 - -
Trre1g01734 350 SMART ring_2 302 339 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01734 Trre-Chr1 13394212 13395264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01734 297 346 C3H Transcription Factor Family AT3G60080 56.604 6.09e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01734 - - tpra:123898854 322.013