Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01726 ATGAGAAATAGAGAAAATGAAGCTTTCTCTCTACTCAAGTGTGTCTCATCTTCATCCATCCATTCTAAAGATAACCAAATTATGACTAACATTGCCAAGGAGTTCCCTGATTTCTTAACAGTCTTTCTTGCAGAGAAGCACTCTGAGAGAATGCTTATCCCAGATGCTTTTGTGAGCTTAATGCTTTCAAAACAAAAGGTATTGAAGAATTTTATCCTAAGAGATCATAGAGGAAGAGATTGGCACGTCAGAGCGCGTCCTATTGGTGGCAAGCTTTATTTTAATGATGGCTGGAAGAGATTTAGAGAAGAAAATTGTTTAGAGGAGAATGGCTTCCTTGTTTTTACACATATTGAAAACAATGTATTTAAGTTCAAAATCCTTGAACTATCATCAATGTGTGAAATGATGAAGATAGTGGATGAAGAGGAAATTAATAATAATATGATGAATGTTGAGGCTGAGGAAGAAGAGGAAGACGAAGATGATGATGATGGCGATGACGCTGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATTATACAATGGTACAGGAAGAACATGATGATGATGATGATGATGATGATGAGCAGGAGGAAGACGAGGATATTGATGATGACGATTATGAGGAGGAGGAGGAGGAGAATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACGACGATGTGTGTATAATAGTGAAAGAAAAAAAGAATGAAGGAGTTGAGAAGGGAACTAGTAGAAGCTGTGAACATGAACATTGTAGAACTTGCAAAACACGGAGCATTGGGAGCAGTTCAGCAGCTACAAAATTTGAACATGGTGAAATTGATGTTGAAATGTATATTCAGCCAGGAAATCCACAATTCTTTGCAAAACATAATCCTTGCAGACCCAATGAATTGCATATTCCAGCAAAAGTTATTAAGGATTTCAGTCTTTGCTTTACAAAGCATATCACCCTTGTATGTTGCCACTGCAAGGATGTTCAAAGAAATGAAATTGTAGCCTATCATCACATCTTGCCACAAATGAGCACAAAACATATCCAAAAGAGAGGTAAAATAAGTACATGGAGAGATGGTCGTGTGGTTGTGAAAGGGTGGGAAGCTTTTTGTAAAAGGAGCAAGATAACAGAAAATGATAGTTGCTTATGTGAAATTGTGCTGCGTGAAGATAGAACAATCGAAATGTTAAGAGTGCACGTCGTTGGGAAGAATTGTGCTGCGTGA 1260 0.3738 MRNRENEAFSLLKCVSSSSIHSKDNQIMTNIAKEFPDFLTVFLAEKHSERMLIPDAFVSLMLSKQKVLKNFILRDHRGRDWHVRARPIGGKLYFNDGWKRFREENCLEENGFLVFTHIENNVFKFKILELSSMCEMMKIVDEEEINNNMMNVEAEEEEEDEDDDDGDDADDDDDDDDDDDDDDDDYTMVQEEHDDDDDDDDEQEEDEDIDDDDYEEEEEENDDDDDDDDDDDDDDDDDVCIIVKEKKNEGVEKGTSRSCEHEHCRTCKTRSIGSSSAATKFEHGEIDVEMYIQPGNPQFFAKHNPCRPNELHIPAKVIKDFSLCFTKHITLVCCHCKDVQRNEIVAYHHILPQMSTKHIQKRGKISTWRDGRVVVKGWEAFCKRSKITENDSCLCEIVLREDRTIEMLRVHVVGKNCAA 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01726 419 PANTHER B3 DOMAIN-CONTAINING 33 401 - -
Trre1g01726 419 SUPERFAMILY DNA-binding pseudobarrel domain 292 416 IPR015300 -
Trre1g01726 419 Coils Coil 140 162 - -
Trre1g01726 419 CDD B3_DNA 47 128 IPR003340 GO:0003677
Trre1g01726 419 SMART B3_2 38 131 IPR003340 GO:0003677
Trre1g01726 419 SUPERFAMILY DNA-binding pseudobarrel domain 34 129 IPR015300 -
Trre1g01726 419 Gene3D - 29 134 IPR015300 -
Trre1g01726 419 ProSiteProfiles B3 DNA-binding domain profile. 36 131 IPR003340 GO:0003677
Trre1g01726 419 MobiDBLite consensus disorder prediction 153 237 - -
Trre1g01726 419 Pfam B3 DNA binding domain 44 127 IPR003340 GO:0003677
Trre1g01726 419 Gene3D - 281 415 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01726 Trre-Chr1 13348879 13352604 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01726 35 412 B3 DNA Binding Superfamily AT3G06160 22.487 3.89e-21 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01726 B3 4.5e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01726 - - mtr:120578114 429.483