Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01721 ATGACTAATACTCCGAAGGAGTTCCCTGACTTTTTCAAAGTCTTCCTTGCTGAAAAGCACACCGAGAGAATGCTTATCCCTATTGCTTTTGCGAAGCTAGTGCGTTTAAAAAGGAGGGTAATGAAGGATTTTATCCTCAGAGATCGTAGAGGTAGAGATTGGCATGTCAAAGTGCGTCCTATTGGCGGTAGGCTTTATTTTGATGATGGTTGGAAGCGATTCGGAGAAGATAATTCTTTAGAGCAGAATGATTTCCTTGTTTTTACACATATTGAAGATAATGTATTTAAGTTCAAAATCTTTGAACTATCATCAATGTGTGAAAAGATAAAGGTAATTGATGAGGAGGAAGAGAATAATATGATGGACGATAAGGAGGAGGTGGAGGTGGATGACGATGACAGCAACAAAGAAGATGATGATGGCGATGTTAATATGATGGCAGAGGAAGAAGAAGACAATGATGAACATCAACATTGTAGAACCTGCAAAGACTGGAGCATTGGGAGCAGTTCTGCAGTTCCAAAACTCGAAGACGATGAAATCGATGCTGAAATGTATATCCAGGAGGGAAATCCATTCTTCGTTGCAAAACATACGCATAACAGATCCAATCAATTACATATTCCAAAAAGTGTTATTAAGGATTTCTGCTTTTGCTTTTCAAAGCATATCAACCTTGTATGTTGCCATTGCAAGGATGTTCAAACAAATGAAATAGCAGCCTATCATCATGTGTTGCCACAAATGAGCACAAAACATATCGGAAAGAGAGGAGAAATATGTCATTGGAGGGACGGTCGAATATTTGTGAAAGGGTGGGCAGATTTTTGTACAATGAGCAATATCACCGAAAATGATCGATGTTTATGTGAAATTGTGTTGCGTGAAGACAGAACAATCGAAACGTTAATGGTACACATTGTTAATGTTGAGCAGGAATGA 945 0.3852 MTNTPKEFPDFFKVFLAEKHTERMLIPIAFAKLVRLKRRVMKDFILRDRRGRDWHVKVRPIGGRLYFDDGWKRFGEDNSLEQNDFLVFTHIEDNVFKFKIFELSSMCEKIKVIDEEEENNMMDDKEEVEVDDDDSNKEDDDGDVNMMAEEEEDNDEHQHCRTCKDWSIGSSSAVPKLEDDEIDAEMYIQEGNPFFVAKHTHNRSNQLHIPKSVIKDFCFCFSKHINLVCCHCKDVQTNEIAAYHHVLPQMSTKHIGKRGEICHWRDGRIFVKGWADFCTMSNITENDRCLCEIVLREDRTIETLMVHIVNVEQE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01721 314 PANTHER B3 DOMAIN-CONTAINING 7 297 - -
Trre1g01721 314 Gene3D - 3 107 IPR015300 -
Trre1g01721 314 SUPERFAMILY DNA-binding pseudobarrel domain 7 103 IPR015300 -
Trre1g01721 314 SMART B3_2 11 104 IPR003340 GO:0003677
Trre1g01721 314 MobiDBLite consensus disorder prediction 119 143 - -
Trre1g01721 314 CDD B3_DNA 9 101 IPR003340 GO:0003677
Trre1g01721 314 Gene3D - 178 313 IPR015300 -
Trre1g01721 314 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
Trre1g01721 314 Pfam B3 DNA binding domain 11 102 IPR003340 GO:0003677
Trre1g01721 314 MobiDBLite consensus disorder prediction 117 143 - -
Trre1g01721 314 SUPERFAMILY DNA-binding pseudobarrel domain 188 309 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01721 Trre-Chr1 13328512 13329870 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01721 8 308 B3 DNA Binding Superfamily AT3G06160 23.620 1.41e-20 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01721 B3 6.2e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01721 - - mtr:120578114 415.616