Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01717 ATGCTTATCCCAGTTGCTTTTGTGAGGCTAATGCATTCAAAAAAGAAGGTAATTAAGGATTTTATCCTAAGAGATGATAGAGGAAGAGATTGGCATGTCAAAGTGTGTCGTATTGGCGACAAGCTTTATTTTGAGGATGGTTGGAAGCAATTCAGAGAAGAAAACTCTTTAGAGGAAAATGACTTCCTTTTTTTTACACATATTGAAAATAATGTATTCAAGTTCAAAATCCTTGAATTGTCATCAATGTGTGAAAAGGTGAAGGTAATAGATGAGGAGGAAAACATTAATATGATGGAGAATCATGAAAATGATGATGGTGGTGATGGCAATGATGATGATGATATCATGGTAGAGGAAGATGAAGAAGATGATGATGATGATGTTGCTGATGATGACGAGGAAGACGATGATGAGTACATAATTAAAGAAGAAGAAGAAGAAGAAGAGAATGAAGAAGTGTACAAGAAATGTAATAAAAGTGAACCTCAACATTGTAGAACCTGCAAAAATTGGGACAATGGAAGTAGCTCTGCAGGTTCAATACTTGAAGATGATGAAATTAATGCTGAAATGTATGTTCAACCAGGAAATCCATACTTCATTGCAAAACCTCTTCATTACAGACCCAATGAATTGCACATTCCAAAGAATATTATCAAGGATTTCTGTATTTGCTTCACAAAATATATCAACCTTGTATGTTGCAACTGCAAGGATATTCAAAGCAATGATATAGCATACTATCATAACATGCTGCCACAAATGAACACAAACCATATCGAAAAGAGAGGAAAAGTACGTACATGGACAAACGGCCGAATCTTGGTGCTAGGGTGGTTAGATCTTTGTAAAATGAGCAAGATCAGAGAAAATGATACATGCTTGTGTGAAATTGTGTTGCGTGACAATGAAGCAATAGAAATGATAAGGGTCCACGTCGTTAGGAAGGAATGA 957 0.3563 MLIPVAFVRLMHSKKKVIKDFILRDDRGRDWHVKVCRIGDKLYFEDGWKQFREENSLEENDFLFFTHIENNVFKFKILELSSMCEKVKVIDEEENINMMENHENDDGGDGNDDDDIMVEEDEEDDDDDVADDDEEDDDEYIIKEEEEEEENEEVYKKCNKSEPQHCRTCKNWDNGSSSAGSILEDDEINAEMYVQPGNPYFIAKPLHYRPNELHIPKNIIKDFCICFTKYINLVCCNCKDIQSNDIAYYHNMLPQMNTNHIEKRGKVRTWTNGRILVLGWLDLCKMSKIRENDTCLCEIVLRDNEAIEMIRVHVVRKE 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01717 318 PANTHER B3 DOMAIN-CONTAINING 3 304 - -
Trre1g01717 318 Gene3D - 1 84 IPR015300 -
Trre1g01717 318 ProSiteProfiles B3 DNA-binding domain profile. 1 81 IPR003340 GO:0003677
Trre1g01717 318 CDD B3_DNA 1 78 IPR003340 GO:0003677
Trre1g01717 318 SMART B3_2 7 81 IPR003340 GO:0003677
Trre1g01717 318 SUPERFAMILY DNA-binding pseudobarrel domain 1 79 IPR015300 -
Trre1g01717 318 MobiDBLite consensus disorder prediction 100 137 - -
Trre1g01717 318 MobiDBLite consensus disorder prediction 106 137 - -
Trre1g01717 318 Pfam B3 DNA binding domain 1 77 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01717 Trre-Chr1 13277810 13280017 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01717 1 316 B3 DNA Binding Superfamily AT3G06160 20.122 4.95e-15 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01717 B3 3e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01717 - - mtr:120578114 397.127