Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01716 ATGACTAACACTGCTAAGGAGTTCCCTGACTTTTTCAAAGTCTTCCTCATTGAGAAGCATTCTGATAGAATGCTTATCCCAGTTGCTTTTGTGAGGCTAATGCATTCAAAAAAGAAGGTAATTAAGGATTTTATCCTAAGAGATGATAGAGGAAGAGATTGGCATGTCAAAGTGTGTCGTATTGGCGACAAGCTTTATTTTGAGGATGGTTGGAAGCAATTCAGAGAAGAAAACTCTTTAGAGGAAAATGACTTCCTTTTTTTTACACATATTGAAAATAATGTATTCAAGTTCAAAATCCTTGAATTGTCATCAATGTGTGAAAAGGTGAAGGTAATAGATGAGGAGGAAAACATTAATATGATGGAGAATCATGAAAATGATGATGGTGGTGATGGCAATGATGATGATGATATCATGGTAGAGGAAGATGAAGAAGATGATGATGATGATGTTGCTGATGATGACGAGGAAGACGATGATGAGTACATAATTAAAGAAGAAGAAGAAGAAGAAGAGAATGAAGAAGTGTACAAGAAATGTAATAAAAGTGAACCTCAACATTGTAGAACCTGCAAAAATTGGGACAATGGAAGTAGCTCTGCAGGTTCAATACTTGAAGATGATGAAATTAATGCTGAAATGTATGTTCAACCAGGAAATCCATACTTCATTGCAAAACCTCTTCATTACAGACCCAATGAATTGCACATTCCAAAGAATATTATCAAGGATTTCTGTATTTGCTTCACAAAATATATCAACCTTGTATGTTGCAACTGCAAGGATATTCAAAGCAATGATATAGCATACTATCATAACATGCTGCCACAAATGAACACAAACCATATCGAAAAGAGAGGAAAAGTACGTACATGGACAAACGGCCGAATCTTGGTGCTAGGGTGGTTAGATCTTTGTAAAATGAGCAAGATCAGAGAAAATGATACATGCTTGTGTGAAATTGTGTTGCGTGACAATGAAGCAATAGAAATGATAAGGGTCCACGTCGTTAGGAAGGAATGA 1026 0.3587 MTNTAKEFPDFFKVFLIEKHSDRMLIPVAFVRLMHSKKKVIKDFILRDDRGRDWHVKVCRIGDKLYFEDGWKQFREENSLEENDFLFFTHIENNVFKFKILELSSMCEKVKVIDEEENINMMENHENDDGGDGNDDDDIMVEEDEEDDDDDVADDDEEDDDEYIIKEEEEEEENEEVYKKCNKSEPQHCRTCKNWDNGSSSAGSILEDDEINAEMYVQPGNPYFIAKPLHYRPNELHIPKNIIKDFCICFTKYINLVCCNCKDIQSNDIAYYHNMLPQMNTNHIEKRGKVRTWTNGRILVLGWLDLCKMSKIRENDTCLCEIVLRDNEAIEMIRVHVVRKE 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01716 341 SMART B3_2 11 104 IPR003340 GO:0003677
Trre1g01716 341 SUPERFAMILY DNA-binding pseudobarrel domain 7 102 IPR015300 -
Trre1g01716 341 Gene3D - 2 107 IPR015300 -
Trre1g01716 341 CDD B3_DNA 9 101 IPR003340 GO:0003677
Trre1g01716 341 PANTHER B3 DOMAIN-CONTAINING 7 327 - -
Trre1g01716 341 Pfam B3 DNA binding domain 11 100 IPR003340 GO:0003677
Trre1g01716 341 MobiDBLite consensus disorder prediction 129 160 - -
Trre1g01716 341 MobiDBLite consensus disorder prediction 123 160 - -
Trre1g01716 341 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01716 Trre-Chr1 13277810 13280086 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01716 8 339 B3 DNA Binding Superfamily AT3G06160 21.221 1.77e-19 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre1g01716 B3 4.5e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01716 - - mtr:120578114 434.106