Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01713 ATGTCCGAGAGAATTTTCATCAGAAATGATGACGACAAGAACCGCAAGCGCAAAATGGAGGGCTTAGAGTCGAAACCAAAGAAAGAACCAAACGTATTGCCACAAACCTCTGAATCTGATGTTAAGGATTTACTTACTCTGAGGCTTGGCATTCACACCAAGCCTACTATCAAATCCTTGGAGGTTGGCCAACATTCAAGTTCATATCAAAATACTCTTAAGTCTTTATCTCAGAATGCTATTAATGAACCTTTACCCCAGAATACTACCAATGAACCTTTACCTGAGCAAGAAGTGAGAGAATTTCTTTGTCATTATTGTGACAAGAAATTCTCCACTTCTCAATCACTTGGAGGACACCAAAATGCTCATAAGCATGAGCGTGCCTCCAAAAAAATGGAAGAACAAAGGAGAAAGATGGAGGAAATGAATTCAACCCTAAGGTTTAGCTATATTAATCAGCTATACCCTTATCAATTTTCAAGTCCTATTCACTATCAAGGGTATTCGTATTTACATAGTCCTAACTTGAACCATCCAATTATCTCCCATATTAACAATACCATGCCTTCTTGCGGTGGAGGTCAAAATGTTGCATTGCCAATTTCGCAAAGGCCAAACACTCTGGGTTTGAGACTTTTTTCTCAAGCTAATCAAACCCCTTCAATTGATGATGGCACAGAAAGAAATTTCAATGCTCAGTTTCCTTCCCATGCTCTTCCATTGTTATCTCGTGCCGATCCCATTGGAGGCGACCTAGTTCAAATAAATCACGTGTCTTCATCATCAACTCAATCAACCTCGGAAGTACTAAACTTGAATCTCACCCTTTAA 834 0.3933 MSERIFIRNDDDKNRKRKMEGLESKPKKEPNVLPQTSESDVKDLLTLRLGIHTKPTIKSLEVGQHSSSYQNTLKSLSQNAINEPLPQNTTNEPLPEQEVREFLCHYCDKKFSTSQSLGGHQNAHKHERASKKMEEQRRKMEEMNSTLRFSYINQLYPYQFSSPIHYQGYSYLHSPNLNHPIISHINNTMPSCGGGQNVALPISQRPNTLGLRLFSQANQTPSIDDGTERNFNAQFPSHALPLLSRADPIGGDLVQINHVSSSSTQSTSEVLNLNLTL 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01713 277 SUPERFAMILY beta-beta-alpha zinc fingers 95 144 IPR036236 -
Trre1g01713 277 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 14 222 IPR044246 GO:0009788
Trre1g01713 277 ProSitePatterns Zinc finger C2H2 type domain signature. 104 126 IPR013087 -
Trre1g01713 277 Gene3D Classic Zinc Finger 85 153 - -
Trre1g01713 277 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 129 IPR013087 -
Trre1g01713 277 MobiDBLite consensus disorder prediction 1 27 - -
Trre1g01713 277 MobiDBLite consensus disorder prediction 1 39 - -
Trre1g01713 277 Coils Coil 123 146 - -
Trre1g01713 277 MobiDBLite consensus disorder prediction 114 137 - -
Trre1g01713 277 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01713 Trre-Chr1 13259418 13260343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01713 95 200 C2H2 Transcription Factor Family AT5G27880 37.615 1.24e-11 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g01713 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01713 - - tpra:123892015 249.595