Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01702 ATGTCTAACCACATCAATGTTTGTGTCTGTCTATCACTTGGTGGTGGTTCTTGCCACCGTTTCCCCTACGGTTGTTTAACATTTGATCAAATCAATTTAACCAAGAAAAGAAAATGTGCCCAGCAAAAAATCACTCATCCTGCAACAATGAACAATACTGATGATCAATGGAAGATCAAGAAGGTCTTGACAGGGACTGATGTATGTGGGAGGTTTAGAAGGCTTTTGTTGAATCGGGATTTGGCTTATACTTATGTAATTCCTGTATTGGGTGGTTTTGAAGTTGCTTACCAACAAGAAGGAGTGAAAGTTCAAGTGTGGGATGTTGACACAAAGTCTCATCATTCTCTCGTGTTCAAGATATGGCATTCCGCACCGAGTTACCTTTTCACCAAGACATGGTACAATGACTTTGTTCTTCGAAGGGGATTGAAGGAAGGAGATGCAATTGGTTTTCATTGGGATCAGGCAAACCAACGATTTAATTTCTCGGTTCTTAATATAACTCTTAGTTTATAA 519 0.3931 MSNHINVCVCLSLGGGSCHRFPYGCLTFDQINLTKKRKCAQQKITHPATMNNTDDQWKIKKVLTGTDVCGRFRRLLLNRDLAYTYVIPVLGGFEVAYQQEGVKVQVWDVDTKSHHSLVFKIWHSAPSYLFTKTWYNDFVLRRGLKEGDAIGFHWDQANQRFNFSVLNITLSL 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01702 172 SUPERFAMILY DNA-binding pseudobarrel domain 55 167 IPR015300 -
Trre1g01702 172 CDD B3_DNA 57 167 IPR003340 GO:0003677
Trre1g01702 172 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 33 167 - -
Trre1g01702 172 Gene3D - 48 165 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01702 Trre-Chr1 13188496 13189014 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01702 60 168 RAV Transcription Factor Family AT1G50680 29.268 6.91e-06 43.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01702 - - tpra:123892005 231.491