Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01698 ATGCCTAACCGCATCAATGTTTGTGTCTGTCTATCACTTGGTGGTCGTTCTTGCCACCGTTTTCCCTACGGTTGTTTAACATTTGATGAGATCCATTTAACCAAGAAAAGAAAACGTGCCCAACAAGAAACCACTCAACTTTCAACAATGAACAATGTTGATGATCAATGGGAGATCAAGAAGGTCTTGAAATGGAGTGATGTAAGTTGCAGTTTGAAAAGACTTTTGTTGAATAAGGATTTTGCTTATGATTATGTAATTCCTGTGTTGACGGGTGGTCCTGGAGTTGCTTACCAGAAAGAAGGAGTGACAGTTCAAGTATGGGATGTTGACACAAAGTCTCTTCATTCTCTTGTTTTCAAGATATGGCCTTCTGCACCAAGTTATGTTTTCATCAAGACGTGGTTCGATGACTTTGTTCTTCGAAGGGGGTTGAAGGAAGGAGATGAAATCGGTCTTCATTGGGATCAGGCAAACCAACGATTTAATTTCTCAGTTCTTAATATAGCTCTTAGTTTATAA 522 0.3927 MPNRINVCVCLSLGGRSCHRFPYGCLTFDEIHLTKKRKRAQQETTQLSTMNNVDDQWEIKKVLKWSDVSCSLKRLLLNKDFAYDYVIPVLTGGPGVAYQKEGVTVQVWDVDTKSLHSLVFKIWPSAPSYVFIKTWFDDFVLRRGLKEGDEIGLHWDQANQRFNFSVLNIALSL 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01698 173 SUPERFAMILY DNA-binding pseudobarrel domain 55 167 IPR015300 -
Trre1g01698 173 Gene3D - 47 166 IPR015300 -
Trre1g01698 173 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 36 168 - -
Trre1g01698 173 CDD B3_DNA 57 168 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01698 Trre-Chr1 13160202 13160723 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01698 59 156 B3 DNA Binding Superfamily AT3G24650 30.612 8.22e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01698 - - tpra:123892005 245.358