Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01688 ATGTATTATCGTGGAGTTATGGCAGGCCAAATTGGTCATGGTATCATGGAAGAAGAAGTATGGAGGAAAGGACCTTGGACTGCTGAAGAGGATAGGTTGCTTATTGAGTATGTTAGGGTGCATGGTGAAGGGAGGTGGAATTCTGTTGCTAGACTTGCAGGATTGAGAAGGAATGGAAAGAGTTGCAGATTGAGATGGGTGAATTATCTAAGGCCAGATCTCAAAAGGGGACAAATCACACCACAAGAAGAGACCGTAATTCTAGAGCTGCATGCTAGGTGGGGAAACAGGTGGTCAACAATTGCAAGAAACTTACCGGGAAGAACGGATAACGAAATAAAGAACTATTGGAGGACTCATTTCAAGAAAAAGGCAAAAACTCCTTCTGATGCCGCCGAAAAGGCGAAAAATCGATTCATGAGGAAGCAACTATTTCACCAGCAACAACAACAGTTGCAACAAATTCAACAGCAGCAGCAACAACAACAACTGCAATTCAACTGGGACATGAAAGATGTCATGTCCTTGTTTGAGGAAAATAATAATAACCATAGAGTTCCTTATATATCTCAAACTAGACAAGAAATGTTCAACATGTGTCCAAACACAACAGAAGAACAGAGTTACTTTATGTTTAATGGAAACTCTTCTGTACAAGATTCTTCAGCAGATGATGTTTTGTGGGATGATGGACTGTGGAATTTGGATGATGTTCATGGAAATTTAAGTGTTGCTAATGCAACAAACAAAACTGGTTTATATAATTTAATTGCTCCTAATTATTGTTAG 789 0.3929 MYYRGVMAGQIGHGIMEEEVWRKGPWTAEEDRLLIEYVRVHGEGRWNSVARLAGLRRNGKSCRLRWVNYLRPDLKRGQITPQEETVILELHARWGNRWSTIARNLPGRTDNEIKNYWRTHFKKKAKTPSDAAEKAKNRFMRKQLFHQQQQQLQQIQQQQQQQQLQFNWDMKDVMSLFEENNNNHRVPYISQTRQEMFNMCPNTTEEQSYFMFNGNSSVQDSSADDVLWDDGLWNLDDVHGNLSVANATNKTGLYNLIAPNYC 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01688 262 Coils Coil 145 165 - -
Trre1g01688 262 FunFam MYB-related transcription factor 79 125 - -
Trre1g01688 262 SMART sant 22 72 IPR001005 -
Trre1g01688 262 SMART sant 75 123 IPR001005 -
Trre1g01688 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 74 IPR017930 -
Trre1g01688 262 ProSiteProfiles Myb-like domain profile. 71 121 IPR001005 -
Trre1g01688 262 ProSiteProfiles Myb-like domain profile. 22 70 IPR001005 -
Trre1g01688 262 Pfam Myb-like DNA-binding domain 76 120 IPR001005 -
Trre1g01688 262 Pfam Myb-like DNA-binding domain 23 70 IPR001005 -
Trre1g01688 262 FunFam Myb transcription factor 23 75 - -
Trre1g01688 262 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 17 218 IPR044676 GO:0003700|GO:0006355|GO:0043565
Trre1g01688 262 CDD SANT 80 121 IPR001005 -
Trre1g01688 262 Gene3D - 80 124 - -
Trre1g01688 262 CDD SANT 25 70 IPR001005 -
Trre1g01688 262 Gene3D - 23 75 - -
Trre1g01688 262 SUPERFAMILY Homeodomain-like 22 117 IPR009057 -
Trre1g01688 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 75 125 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01688 Trre-Chr1 13073240 13074839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01688 16 262 MYB Transcription Factor Family AT4G13480 53.030 8.22e-85 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g01688 Myb_DNA-binding 3.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01688 K09422 - gmx:100795981 398.282