Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01687 ATGTCGCTGCCGGAATGTTCAGTGGACCAACTAACGCAGTTCATCGGCCCAAATGCAACAAACGCAGAAGCTGCCGCTAAGTTCATCTGCAACCAGTTCTCCGCCGTGGGAAATAAGTTCGTAGACACACAATTTGCGGTTGACAACACATACCTTCTATTTTCAGCTTATCTTGTTTTCTCTATGCAACTTGGTTTTGCTATGCTCTGTGCTGGTTCAGTTAGAGCCAAAAACACCATGAACATCATGCTCACAAACGTTCTTGACGCTGCCGCCGGTGGTCTTTTCTACTATCTCTTCGGTTTCGCCTTTGCTTTCGGCGGACCCTCCAACGGTTTCATCGGAAAACATTTCTTCGGTCTTAAAGACGTTCCGACCGAAGCTTTTGATTACAGTTATTTTCTCTATCAATGGGCTTTTGCTATAGCAGCCGCTGGCATCACCAGCGGCTCAATCGCGGAACGAACTCAGTTCGTTGCGTATCTTATTTACTCTTCTTTTCTCACAGGATTTGTTTACCCTGTGGTTTCTCATTGGTTTTGGTCCGGTGATGGTTGGGCTAGCGCAACCAACACCGGAAACCTTTTGTTCGGCACCGGAGTCATCGACTTTGCTGGCTCCGGTGTTGTTCACATGGTTGGTGGTATTGCTGGTCTCTGGGGAGCACTCATCGAAGGTCCGCGAATTGGACGGTTCGATCACTCTGGTCGAGCTGTCGCTCTTCGCGGACACAGCGCTTCCCTTGTTGTTCTTGGTACCTTCATGCTTTGGTTTGGTTGGTATGGTTTCAACCCTGGTTCCTTCACCAAGATTCTCAGTCCTTATAACTCAGGTAACTACTATGGACAGTGGAGTGCGGTGGGTAGGACGGCGGTGACGACAACGTTAGCAGGATGCACGGCGGCGCTGACAACACTTTTTGGAAAAAGAATCCTCTCCGGTCATTGGAACGTTACCGACGTATGTAACGGTTTATTAGGCGGTTTCGCCGCAATAACCGCCGGGTGCTCCGTCGTGGAACCATGGGCAGCAATAGTTTGTGGCTTTATGGCAGCGATTGTTTTGATCGCGTGCAACATACTCGCGGAAAAGATGCGTTACGATGATCCATTAGAAGCAGCGCAATTACACGGAGGATGTGGCGCGTGGGGTATAATATTCACTGCTTTGTTTGCAAAAGAAGAGTATGTGAACCAAGTTTATCCGGGTAAACCGGGTCGACCCTATGGGTTATTTATGGGTGGTGGAGGGAAGTTATTAGGGGCACATGTGATTCAAATTTTGGTTATTATCGGTTGGGTTAGTGCAACTATGGGTCCTTTATTCTTTGTTTTGAATAAAATGAAGTTGTTAAGGATTTCAGCTGAAGATGAAATGGCGGGTATGGATATGACCCGACATGGTGGGTTTGCTTATGCTTATGAAGATGAGTCACACAAAAATGGGATTCAATTGAGGAAAGTTGAACATAACTCTTCTTCTACTCCAACTCCCACCACAGATTCATGA 1509 0.4725 MSLPECSVDQLTQFIGPNATNAEAAAKFICNQFSAVGNKFVDTQFAVDNTYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGGPSNGFIGKHFFGLKDVPTEAFDYSYFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGFVYPVVSHWFWSGDGWASATNTGNLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDHSGRAVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILSPYNSGNYYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITAGCSVVEPWAAIVCGFMAAIVLIACNILAEKMRYDDPLEAAQLHGGCGAWGIIFTALFAKEEYVNQVYPGKPGRPYGLFMGGGGKLLGAHVIQILVIIGWVSATMGPLFFVLNKMKLLRISAEDEMAGMDMTRHGGFAYAYEDESHKNGIQLRKVEHNSSSTPTPTTDS 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01687 502 PANTHER AMMONIUM TRANSPORTER 20 475 - -
Trre1g01687 502 FunFam Ammonium transporter 29 487 - -
Trre1g01687 502 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519|GO:0016020|GO:0072488
Trre1g01687 502 NCBIfam ammonium transporter 48 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Trre1g01687 502 Pfam Ammonium Transporter Family 51 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Trre1g01687 502 Gene3D Ammonium transporter AmtB like domains 28 492 IPR029020 -
Trre1g01687 502 SUPERFAMILY Ammonium transporter 47 453 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01687 Trre-Chr1 13060146 13061857 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01687 5 498 Inorganic Solute Cotransporters AT4G13510 81.909 0.0 830
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01687 K03320 - egt:105950262 843.958