Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01679 ATGGCTTCCGCCGCCGCAAGACCCCTTGTCACCGTCCAGGCACTCGATTCCGATATGGCAACCGATTCCCCAACCACCCTACCCATTCCCGACGTAATGAGAGCCTCCATTCGTCCCGATATCGTCAATTTCGTCCACTCCAACATCTCCAAAAATGCTCGTCAACCCTACGCCGTCAGCCGCCGTGCAGGACACCAAACCTCCGCCGAATCATGGGGAACCGGTCGTGCTGTCTCCCGTATTCCTCGTGTTTCCGGAGGTGGAACTCACCGTGCAGGACAAGCAGCCTTCGGAAACATGTGTCGCGGTGGTCGGATGTTTGCTCCGACGAGAATCTGGCGCCGCTGGCACCGTAAGATCAATGTCAATCAGAAGCGTTACGCAGTTGTTTCTGCTATTGCTGCTTCTGCAGTTCCTTCACTTGTTCTCGCTCGTGGTCACAGAATTGAAGCTGTTCCTGAATTTCCACTTGTTGTTGGTGATTCTGCTGAAGGAGTTGAGAAAACAAAGGAAGCAATCAAAGTTTTGAAGAAGATCGGAGCTTTTCCCGATGCTGAGAAAGCGAAAGATAGCCATGGAATTCGTCCTGGCAAAGGTAAAATGCGTAACCGTCGCTATATATCTCGTAAAGGACCGTTGATTGTTTATGGTACCGATGGAGCGAAAGCGGTTAAAGCTTTTAGGAATATACCTGGTGTTGAAATTACAAATGTTGAAAGACTTAATCTTTTGAAACTTGCACCTGGTGGACATTTAGGTAGATTTGTTGTTTGGACTAAATCTGCATTTGAGAAACTCGATTCGATTTATGGGTCTTTTGATAAGGGTAGTGAGAAGAAAAAGGGGTATGTTTTACCTAGGGCAAAGATGGTTAATTCTGATTTGACTAGGATTATTAATTCTGATGAGGTTCAATCTGTTGTGAGGCCTGTTAAGAAGGATGTTAAGCGCGCCACGCTTAAGAAGAATCCTCTTAAGAATCTTAATGTTATGCTTAGACTTAATCCTTATGCTAAGACTGCTAAGAGGATGGCATTACTTGCTGAGGCTGAACGGGTTAAGGCTAAGAAGGAGAAGCTTGATAAGAAGAGGAAGACTGTTTCTAAGGAGGAAGCCTCTGCCATTAAGGCTGCAGGAAAAGCATGGTACAACACCATGGTCTCTGATTCTGATTATGCCGAATTTGACAACTTCTCCAAGTGGTTGGGTGTATCACAGTGA 1221 0.4611 MASAAARPLVTVQALDSDMATDSPTTLPIPDVMRASIRPDIVNFVHSNISKNARQPYAVSRRAGHQTSAESWGTGRAVSRIPRVSGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRKINVNQKRYAVVSAIAASAVPSLVLARGHRIEAVPEFPLVVGDSAEGVEKTKEAIKVLKKIGAFPDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTDGAKAVKAFRNIPGVEITNVERLNLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKGSEKKKGYVLPRAKMVNSDLTRIINSDEVQSVVRPVKKDVKRATLKKNPLKNLNVMLRLNPYAKTAKRMALLAEAERVKAKKEKLDKKRKTVSKEEASAIKAAGKAWYNTMVSDSDYAEFDNFSKWLGVSQ 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01679 406 MobiDBLite consensus disorder prediction 56 74 - -
Trre1g01679 406 MobiDBLite consensus disorder prediction 56 95 - -
Trre1g01679 406 Pfam 60S ribosomal protein L4 C-terminal domain 281 353 IPR025755 -
Trre1g01679 406 Gene3D - 4 309 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre1g01679 406 FunFam 60S ribosomal protein L4 4 309 - -
Trre1g01679 406 Coils Coil 343 370 - -
Trre1g01679 406 SUPERFAMILY Ribosomal protein L4 24 268 IPR023574 GO:0003735|GO:0005840|GO:0006412
Trre1g01679 406 ProSitePatterns Ribosomal protein L1e signature. 121 147 IPR013000 -
Trre1g01679 406 Pfam Ribosomal protein L4/L1 family 29 267 IPR002136 GO:0003735|GO:0005840|GO:0006412
Trre1g01679 406 PANTHER 60S RIBOSOMAL PROTEIN L4 5 399 IPR045240 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01679 Trre-Chr1 13017904 13020234 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01679 1 406 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 81.773 0.0 679
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01679 K02930 - gmx:100779764 720.309