Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01676 ATGTTAGAAGATCATGTCAATCAACTCCAGGATGCAAGAGAAAGAGAGCTTTATTTGGCTGAAGAAGAAAGGAGAAATGGTAATGAAATCAAAAGAGATGTGTTGAACTGGTTGGAGAATGTGGACGAGCTCATTGAAAGGGCAAATCAGCTTCAAAATAATCCTCACCGTGCCAATGTAAGGGGCTCAACATGGGGGTTCCCCAATTTGATTTTGCGTCGTCAACTAAATAGGAATGCCATGAAAATTGCAAAAGATGTTATTCAAGTTCAAGGAAAAGGGATGTTTGATAGCATTGGTTACCTTCCGACCCTAGATGGAGTAGCCTCCTCTTCCTCAACAAGAGGTAGTGAAAATTATGAGACAAGGGAGTCACTTAAGGGTGATATTGTGAAAGCTCTAGCAGACCCTAATTCATGCAACATTGGGGTCTATGGTTTGGGTGGGGTGGGTAAGACCACTCTGGTGGAAGACGTTGCTCTAATAGCAAAACAAGGTAAACAGTTCGATATAGTGGTTATAGCAAATGTATCCGCAAATCCAGACTTTAAAACCATTCAAGGGGAGATAGCAGATTTGTTGGGTTTGCGATTTGATGAGGAGACAATTTTTGGAAGAGCAAATCGCCTACGACAAAGAATTAAGATGGAGAGAAGTATCCTTGTCATTCTAGATAATATATGGACCATGTTTGATTTGAAGAAAGCGGGAATCCCAATTGGTAATGAACATCATGGTTGCAAATTATTGATGACAAGTAGAAATCAAGATGTGTTGTTGCAAATGGATGTTCCAAAGGATTACACTTTCAAACTTGAACTTATGAGAGAGAATGAGGCTTTCAGCTTGTTTCAATTTATAGTTGGGGATGTGGTTAAAGATGGCAATTTGAAAGAGGTAGCAATTCAAGTTGCTCAAAAATGTGAAGGTTTGCCTCTTAGGGTAGTGACAATAGCACGTGCAATGAGAAATAGGAGGGATATCCAGTCTTGGAAAGATGCATTAAGGAAATTACAAAGTTATGATCATACCGAGCTGGACGCGTTAACTTATTCTGCTTTGGAATTGAGTTACAACTCATTGGAGAGTGATGAAACGAGGGACATCTTCTTGCTTTTTGCATTAACGCAAGGTAATGATGTAGAGTATTTCCTGAAAGTTGCGATGGGTTTGGAAATATTAAAGCATGTTAATACCGTGGATGAGGCAAGAAACAAATTTTACACAATAACCAGATCTTTGGAGGTGACTGGTTTACTTGATGTTAAAGTAGGTGGAGTGATCCAAATGCACAACTTTGTTCGTGATTTTGCTATAACCATAGCTCATATGGACAGACCTGTATTTCTAAGCAAAAATCCACATGAGGAATGGCTAACCAAGGATTTTTTAAAAAGGTGCACGCAAATTGCTCTACCCAATTATCAAAATGAAGAGCATTTTCCATTAATAATGCAAGATAACAATGAAGAGTACTTTCCAGATGACCAACTTTCTGTTCTATCATATCAACAATCTTTCATTGCCGGAGAGGATGACTATCAAGAGCGTTTGGATCTTCTAATAAGGAGTAATGATCACTCTCTACGTGAAACACAAGGCATGGCTGTTGTGCGAGAGGTTATGAAAGCTGCTGAGAGGTCTGATCTCAAAAGGATAACCCAAGCCTTCCAATATGACGCTGATGAGCAGCACATATTGAATAGGTTTGAGAAGGTTCTACAAGAGGACCTGAAAACAGCTGAAGAAGAGATTTTAAATGAAGAGATGGAACTGGCAAAAGAAAAAGATAAGGGCAAAGGAGCTATAATTGATACAACTCCTATTCACTCACCAGAGCATGTGGAATTCATTCCTGAAGAGATCATCGGAACATCCTCTGGTGGTGAAGTCCTGAAAATGCAAGCTGCCATTGAAGAAGCTAAGACAAGACAAGAGCTACAAGATGTAAGGTTGGACTCTCTGACAGAAGGTCAGCACGCTCTAAGAGAAGATCAGCAGGCTCTGAGACAAACAATATCTGAAATAGCTGCTAGACAAGAAACTATAACTCAGAATCAGAAGGTCATGGACTCAAAGCTTGATGCCATTCTTAACCTTCTTTCTAAGAAACCATAG 2118 0.3961 MLEDHVNQLQDARERELYLAEEERRNGNEIKRDVLNWLENVDELIERANQLQNNPHRANVRGSTWGFPNLILRRQLNRNAMKIAKDVIQVQGKGMFDSIGYLPTLDGVASSSSTRGSENYETRESLKGDIVKALADPNSCNIGVYGLGGVGKTTLVEDVALIAKQGKQFDIVVIANVSANPDFKTIQGEIADLLGLRFDEETIFGRANRLRQRIKMERSILVILDNIWTMFDLKKAGIPIGNEHHGCKLLMTSRNQDVLLQMDVPKDYTFKLELMRENEAFSLFQFIVGDVVKDGNLKEVAIQVAQKCEGLPLRVVTIARAMRNRRDIQSWKDALRKLQSYDHTELDALTYSALELSYNSLESDETRDIFLLFALTQGNDVEYFLKVAMGLEILKHVNTVDEARNKFYTITRSLEVTGLLDVKVGGVIQMHNFVRDFAITIAHMDRPVFLSKNPHEEWLTKDFLKRCTQIALPNYQNEEHFPLIMQDNNEEYFPDDQLSVLSYQQSFIAGEDDYQERLDLLIRSNDHSLRETQGMAVVREVMKAAERSDLKRITQAFQYDADEQHILNRFEKVLQEDLKTAEEEILNEEMELAKEKDKGKGAIIDTTPIHSPEHVEFIPEEIIGTSSGGEVLKMQAAIEEAKTRQELQDVRLDSLTEGQHALREDQQALRQTISEIAARQETITQNQKVMDSKLDAILNLLSKKP 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01676 705 Gene3D - 107 268 IPR027417 -
Trre1g01676 705 PRINTS Disease resistance protein signature 141 156 - -
Trre1g01676 705 PRINTS Disease resistance protein signature 214 228 - -
Trre1g01676 705 PRINTS Disease resistance protein signature 308 322 - -
Trre1g01676 705 Pfam NB-ARC domain 126 347 IPR002182 GO:0043531
Trre1g01676 705 Coils Coil 571 598 - -
Trre1g01676 705 PANTHER NB-ARC DOMAIN-CONTAINING PROTEIN-RELATED 2 474 - -
Trre1g01676 705 Coils Coil 34 54 - -
Trre1g01676 705 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 372 IPR027417 -
Trre1g01676 705 Gene3D - 275 362 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01676 Trre-Chr1 13002443 13005928 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01676 142 436 WRKY Transcription Factor Family AT5G45050 24.590 5.25e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01676 - - mtr:25482804 676.396