Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01673 ATGGCAACTCAAATGAGCAAAAAGCGAAAGTTCGTCGCAGACGGAGTTTTTTTCGCTGAATTGAATGAGGTTTTAACAAGAGAGCTTGCTGAGGATGGTTATTCAGGTGTTGAAGTTAGGGTTACTCCGATGCGCACTGAAATCATCATCAGAGCTACTCGTACTCAAGCTGTTCTTGGTGAGAAGGGAAGGAGGATTAGAGAACTTACCTCAGTTGTACAGAAGAGGTTTAAGTTCCCTGAGAACAGTGTTGAGCTTTATGCTGAGAAGGTTAACAACAGAGGACTTTGTGCCATTGCTCAAGCCGAGTCTCTTCGTTACAAGCTCCTTGGTGGTCTTGCTGTCCGCAGGGCTTGCTATGGTGTTTTGAGATTTGTCATGGAAAGTGGTGCCAAGGGTTGCGAGGTTATTGTCAGTGGAAAATTAAGAGCCCAGAGAGCCAAATCCATGAAATTCAAGGATGGTTACATGATTTCTTCTGGACAACCAGTCAAGGACTACATTGACTCTGCAGTGAGACATGTGCTCCTTAGACAGGGTGTTCTTGGTATTAAAGTTAAGATCATGCTTGATTGGGATCCTAAAGGTAAACAAGGTCCTAAAACTCCTCTCCCTGATATTGTCACCATTCACACTCCAAAGGAGGAGGAAGAGTACATCCGACCTGCTGCTGTTGTGGCAAATGATATCGAGGTCCCTGTCCCAGTTCCTGTTGTTTGA 720 0.4486 MATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVKIMLDWDPKGKQGPKTPLPDIVTIHTPKEEEEYIRPAAVVANDIEVPVPVPVV 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01673 239 Gene3D - 93 219 IPR036419 -
Trre1g01673 239 NCBIfam 30S ribosomal protein S3 8 210 IPR005703 GO:0003735|GO:0006412|GO:0015935
Trre1g01673 239 Pfam KH domain 20 93 IPR004044 GO:0003723
Trre1g01673 239 CDD KH-II_40S_S3 5 95 - -
Trre1g01673 239 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 6 198 - -
Trre1g01673 239 FunFam 40S ribosomal protein S3 93 228 - -
Trre1g01673 239 SUPERFAMILY Ribosomal protein S3 C-terminal domain 93 191 IPR036419 -
Trre1g01673 239 Gene3D - 1 91 IPR015946 -
Trre1g01673 239 FunFam 40S ribosomal protein S3 1 92 - -
Trre1g01673 239 Pfam Ribosomal protein S3, C-terminal domain 106 188 IPR001351 GO:0003735|GO:0006412
Trre1g01673 239 ProSitePatterns Ribosomal protein S3 signature. 147 183 IPR018280 -
Trre1g01673 239 ProSiteProfiles Type-2 KH domain profile. 21 92 IPR004044 GO:0003723
Trre1g01673 239 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 10 99 IPR009019 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01673 Trre-Chr1 12933487 12935477 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01673 1 233 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 88.841 3.70e-154 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01673 K02985 - gmx:100800747 452.595