Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre1g01669 | ATGAACTGCTCCATTTCCGGCGAGGTTCCGGAAGAGCCCGTGGTGTCAAAAGGATCCGGTCTTCTCTTTGAGAAGAGGTTAATCGAGAGACATATTGCGGATTATGGGAAGTGTCCAGTTACTGGAGAACCACTTACTTTGGATGACATTGTACCAATCAAAACAGGAAAGATAGTGAAGCCTAGACCAGTGCAGGCAGCTAGCATCCCTGGCATGCTCGGAATGTTCCAAAATGAATGGGATGGGTTGATGTTATCTAGTTTTGCATTGGAGCAGCAATTGCATACAGCAAGGCAAGAGTTAAGTCATGCTTTATATCAGCATGATGCTGCTTGCCGTGTGATTGCAAGGCTTAAAAAGGAACGGGACGAAGCTAGGTCTTTACTTGCACAGGCAGACAGGCAATTCCCTATTTCTACACCAAATGATGCGACAGCAAATGCTCCTGTTCATAGCAATGGGAAAAGAGCTGCTAATGATGAGGAGCTGGCACCTAATGCGAAGAAATTACATCCTGGAATTTCTTCTAGCATAATTTCTGAGCTAACAGACTGTAATGCTGCTCTTTCACAGCAGAGGAAAAAGCGACAGATTCCTGCGACTTTGGCTCCTATTGATGCTATAGAGACATATACGCAAATATCTAGTCATCCCTTAAACAAAACAAACAGACAAGGCATTATATCTCTGGATATCCTTTATTCTAAGGACTTGATTGCAACCGGAAATATTGATACAAATGCTGTTATCTTTGACCGTCCATCAGGACAAGTATTAGCTACACTCAGCGGTCACTCTAAAAAGGTAACCAGCGTGAAGTTTGTAGGTCAAGGCGAATCTATCATAACTGGTTCAGCAGATAAGACAGTTCGTTTGTGGCAAGGATCAGATGATGGGAACTATACCTGCAGACAGACCTTGAAGGATCATTCGGCTGAGGTGCAAGCTGTGACTGTCCATGCCACCAATAATTACTTTGTGACTGCATCACTTGATGGCACTTGGTGCTTTTATGAACTGTCTTCAGGGACTTGTCTGACTCAGGTTTCGGACTTGTCCGAAGGCTATACATCTGCAGCTTTTCATCCTGATGGTCTTATCCTTGGAACTGGCACTACGGATTCTGTTGTTAAGATCTGGGATGTAAAAAGTCAGGCAAATGTGGCTAAATTTGATGGACATAAGGGGCATGTGACAGCGATATCCTTTTCTGAGAATGGTTACTACCTTGCGACTGCAGCTCATGACGGTGTAAAGCTTTGGGATCTACGCAAATTGAAAAACTTCCGGAATTTTGCCCCATATGACGAAGAAACTCCAACAAACTCTGTGGAGTTTGACCACAGTGGATCCTACCTTGCAGTTGGAGGCTCGGATGTAAGGATATACCAAGTTGCAAATGTGAAATCTGAATGGAACTTGATCAAAACTTTTCCCGATTTATCTGGAACAGGTAAATCCACATGTGTAAAATTTGGCCCAGATTCAAAATACTTAGCAGTTGCATCAATGGACCGGAATCTTAGAATATTCGGCGAACCTGGTGAAGGTATACCTGCAGAATCTTAG | 1569 | 0.4347 | MNCSISGEVPEEPVVSKGSGLLFEKRLIERHIADYGKCPVTGEPLTLDDIVPIKTGKIVKPRPVQAASIPGMLGMFQNEWDGLMLSSFALEQQLHTARQELSHALYQHDAACRVIARLKKERDEARSLLAQADRQFPISTPNDATANAPVHSNGKRAANDEELAPNAKKLHPGISSSIISELTDCNAALSQQRKKRQIPATLAPIDAIETYTQISSHPLNKTNRQGIISLDILYSKDLIATGNIDTNAVIFDRPSGQVLATLSGHSKKVTSVKFVGQGESIITGSADKTVRLWQGSDDGNYTCRQTLKDHSAEVQAVTVHATNNYFVTASLDGTWCFYELSSGTCLTQVSDLSEGYTSAAFHPDGLILGTGTTDSVVKIWDVKSQANVAKFDGHKGHVTAISFSENGYYLATAAHDGVKLWDLRKLKNFRNFAPYDEETPTNSVEFDHSGSYLAVGGSDVRIYQVANVKSEWNLIKTFPDLSGTGKSTCVKFGPDSKYLAVASMDRNLRIFGEPGEGIPAES | 522 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre1g01669 | 522 | FunFam | pre-mRNA-processing factor 19 | 199 | 513 | - | - | |
| Trre1g01669 | 522 | PANTHER | PRE-MRNA-PROCESSING FACTOR 19 | 1 | 512 | IPR038959 | GO:0000398|GO:0000974|GO:0006281|GO:0061630 | |
| Trre1g01669 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 307 | 348 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | CDD | WD40 | 224 | 511 | - | - | |
| Trre1g01669 | 522 | MobiDBLite | consensus disorder prediction | 138 | 159 | - | - | |
| Trre1g01669 | 522 | Gene3D | - | 202 | 512 | IPR015943 | GO:0005515 | |
| Trre1g01669 | 522 | SMART | Ubox_2 | 1 | 66 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre1g01669 | 522 | Coils | Coil | 115 | 135 | - | - | |
| Trre1g01669 | 522 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 60 | IPR013083 | - | |
| Trre1g01669 | 522 | Pfam | Prp19/Pso4-like | 66 | 131 | IPR013915 | - | |
| Trre1g01669 | 522 | CDD | RING-Ubox_PRP19 | 1 | 54 | - | - | |
| Trre1g01669 | 522 | SMART | WD40_4 | 342 | 381 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | SMART | WD40_4 | 471 | 512 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | SMART | WD40_4 | 255 | 294 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | SMART | WD40_4 | 212 | 252 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | SMART | WD40_4 | 425 | 464 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | SMART | WD40_4 | 384 | 422 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | SMART | WD40_4 | 300 | 339 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | SUPERFAMILY | RING/U-box | 1 | 53 | - | - | |
| Trre1g01669 | 522 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 368 | 382 | IPR019775 | - | |
| Trre1g01669 | 522 | ProSiteProfiles | U-box domain profile. | 1 | 70 | IPR003613 | GO:0004842|GO:0016567 | |
| Trre1g01669 | 522 | FunFam | Pre-mRNA-processing factor 19, putative | 1 | 58 | - | - | |
| Trre1g01669 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 349 | 390 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | Pfam | WD domain, G-beta repeat | 483 | 511 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | Pfam | WD domain, G-beta repeat | 387 | 422 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | Pfam | WD domain, G-beta repeat | 353 | 381 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | Pfam | WD domain, G-beta repeat | 256 | 293 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 391 | 431 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 349 | 384 | - | - | |
| Trre1g01669 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 262 | 294 | - | - | |
| Trre1g01669 | 522 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 262 | 294 | IPR001680 | GO:0005515 | |
| Trre1g01669 | 522 | SUPERFAMILY | WD40 repeat-like | 222 | 511 | IPR036322 | GO:0005515 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre1g01669 | Trre-Chr1 | 12903809 | 12911153 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Trre1g01669 | 1 | 516 | U-box Gene Family | AT1G04510 | 74.759 | 0.0 | 809 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre1g01669 | K10599 | - | gmx:100527039 | 949.888 |