Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01668 ATGTTACTTACATTGTTTATATGTCACACATTGCAGGATGAAATTTCAAGTCCAAATATTAGTGCACAAATTTTTGAACTTTGTGACACCGATTTGTTCCATGACTCGTTGCAACAAAATTCTGATGTTACTTCGAGCTCAAATTGTTGTCAAGACGAAAACAACATCAACAACAACAACAACAACAACAACAACAACAACAACAACAATTGCTCGTATACAACGCTAAACAACATATCACAAGCTTTAGATTTAGAAAACAATAACATCAACAACAATAACAATAGCAATAGTAATAGTACCGCTACAACAACGAGCACTACAAGTACTACCAACACGAACAACATTACAAATAATACCAATAATAACCTTTCAATTATCTTCGATTCTCAAGAAGAAATCGACAATGACATATCGGCTTCCATTGACTTCACATCATCGTCATCTTTTCTTGTTCCGACCCTTCTTCCGATCAATACAACTCATCAAGAACAATTTGATTTCTCTTCAACACAACCTCATCATAATCTTGAACTATCAAATTGTTCTGTTTTGAAAGGGCTATCTTCTCAATATCAAACTGATATTAGTCCGGTTTCGGCACCAGCGCAGCTTATCGGTGCTGCTTCGTTTCCTTCTATGTTTGAAGATGATTGCATATCTTCAATTCCTTCTTGTAATCCTTATCTTAGTAATGGTTTAGGTTTGTATATGCCTCAAGGAAATCTAAACACTGCTTTATCTGCTGATAGTTCTAGCTTATTTGGTGGAGGAATTCTATTAGGTTCCGAAATGCAGACTCAAGATTTGGATTATCAAGGTGAAAATGGTGGAATTTATTGTACAGATTCTGTTCAACAAGTTTTTAATCCTCAAGATTTTCAGGTACTTGGTACTGAAAATCACAAACTAGTATCTGGTGGTGGTTCTGCCAATTTGGCACCAGAAATCTCACACTTGGAGGACTCTAGTTTGAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATATATGAAAAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGTCGAAAAACTTTGGCGGATAGCCGACCACGAGTTAGAGGAAGGTTTGCAAAAAATGATGATTTTGGAGAGAATCAAAGGGCAGCTAGTAGCAACCATGAAGATGATGATGAAATAGTTGTTAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGACTTAACTCCTTCAAATGCAACTATTCCATCCAATCCTTGATTTGA 1296 0.3565 MLLTLFICHTLQDEISSPNISAQIFELCDTDLFHDSLQQNSDVTSSSNCCQDENNINNNNNNNNNNNNNNCSYTTLNNISQALDLENNNINNNNNSNSNSTATTTSTTSTTNTNNITNNTNNNLSIIFDSQEEIDNDISASIDFTSSSSFLVPTLLPINTTHQEQFDFSSTQPHHNLELSNCSVLKGLSSQYQTDISPVSAPAQLIGAASFPSMFEDDCISSIPSCNPYLSNGLGLYMPQGNLNTALSADSSSLFGGGILLGSEMQTQDLDYQGENGGIYCTDSVQQVFNPQDFQVLGTENHKLVSGGGSANLAPEISHLEDSSLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENQRAASSNHEDDDEIVVKEEDDMVDSSDIFAHISGLNSFKCNYSIQSLI 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01668 431 Pfam CCT motif 335 377 IPR010402 GO:0005515
Trre1g01668 431 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 61 392 IPR045281 GO:0009909
Trre1g01668 431 ProSiteProfiles CCT domain profile. 335 377 IPR010402 GO:0005515
Trre1g01668 431 MobiDBLite consensus disorder prediction 373 395 - -
Trre1g01668 431 Coils Coil 431 431 - -
Trre1g01668 431 MobiDBLite consensus disorder prediction 86 121 - -
Trre1g01668 431 MobiDBLite consensus disorder prediction 373 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01668 Trre-Chr1 12888201 12890641 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01668 307 383 C2C2-CO-like Transcription Factor Family AT5G24930 36.585 2.26e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g01668 CCT 5.7e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01668 - - lja:Lj6g3v0082150.1 458.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g04588 13 53330639 53331211 Trre1g01668 1 12888201 12890641 PCT