Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01667 ATGTTGCAAGATGTTATCCACCCTCCATCACATGATGATCAACTATCCATTGATGAAATTTCAAGTCCAAATATTAGTGCACAAATTTTTGAACTTTGTGACACCGATTTGTTCCATGACTCGTTGCAACAAAATTCTGATGTTACTTCGAGCTCAAATTGTTGTCAAGACGAAAACAACATCAACAACAACAACAACAACAACAACAACAACAACAACAACAATTGCTCGTATACAACGCTAAACAACATATCACAAGCTTTAGATTTAGAAAACAATAACATCAACAACAATAACAATAGCAATAGTAATAGTACCGCTACAACAACGAGCACTACAAGTACTACCAACACGAACAACATTACAAATAATACCAATAATAACCTTTCAATTATCTTCGATTCTCAAGAAGAAATCGACAATGACATATCGGCTTCCATTGACTTCACATCATCGTCATCTTTTCTTGTTCCGACCCTTCTTCCGATCAATACAACTCATCAAGAACAATTTGATTTCTCTTCAACACAACCTCATCATAATCTTGAACTATCAAATTGTTCTGTTTTGAAAGGGCTATCTTCTCAATATCAAACTGATATTAGTCCGGTTTCGGCACCAGCGCAGCTTATCGGTGCTGCTTCGTTTCCTTCTATGTTTGAAGATGATTGCATATCTTCAATTCCTTCTTGTAATCCTTATCTTAGTAATGGTTTAGGTTTGTATATGCCTCAAGGAAATCTAAACACTGCTTTATCTGCTGATAGTTCTAGCTTATTTGGTGGAGGAATTCTATTAGGTTCCGAAATGCAGACTCAAGATTTGGATTATCAAGGTGAAAATGGTGGAATTTATTGTACAGATTCTGTTCAACAAGTTTTTAATCCTCAAGATTTTCAGGTACTTGGTACTGAAAATCACAAACTAGTATCTGGTGGTGGTTCTGCCAATTTGGCACCAGAAATCTCACACTTGGAGGACTCTAGTTTGAAGGTTGGAAAACTTTCTGTTGAGCAAAGGAAAGAGAAGATTCATAGATATATGAAAAAGAGAAATGAAAGAAATTTCAGCAAGAAAATCAAGTATGCTTGTCGAAAAACTTTGGCGGATAGCCGACCACGAGTTAGAGGAAGGTTTGCAAAAAATGATGATTTTGGAGAGAATCAAAGGGCAGCTAGTAGCAACCATGAAGATGATGATGAAATAGTTGTTAAAGAAGAAGATGATATGGTTGATTCCTCAGATATCTTTGCACATATCAGTGGACTTAACTCCTTCAAATGCAACTATTCCATCCAATCCTTGATTTGA 1311 0.3593 MLQDVIHPPSHDDQLSIDEISSPNISAQIFELCDTDLFHDSLQQNSDVTSSSNCCQDENNINNNNNNNNNNNNNNCSYTTLNNISQALDLENNNINNNNNSNSNSTATTTSTTSTTNTNNITNNTNNNLSIIFDSQEEIDNDISASIDFTSSSSFLVPTLLPINTTHQEQFDFSSTQPHHNLELSNCSVLKGLSSQYQTDISPVSAPAQLIGAASFPSMFEDDCISSIPSCNPYLSNGLGLYMPQGNLNTALSADSSSLFGGGILLGSEMQTQDLDYQGENGGIYCTDSVQQVFNPQDFQVLGTENHKLVSGGGSANLAPEISHLEDSSLKVGKLSVEQRKEKIHRYMKKRNERNFSKKIKYACRKTLADSRPRVRGRFAKNDDFGENQRAASSNHEDDDEIVVKEEDDMVDSSDIFAHISGLNSFKCNYSIQSLI 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01667 436 Pfam CCT motif 340 382 IPR010402 GO:0005515
Trre1g01667 436 MobiDBLite consensus disorder prediction 378 400 - -
Trre1g01667 436 ProSiteProfiles CCT domain profile. 340 382 IPR010402 GO:0005515
Trre1g01667 436 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 67 397 IPR045281 GO:0009909
Trre1g01667 436 MobiDBLite consensus disorder prediction 378 401 - -
Trre1g01667 436 MobiDBLite consensus disorder prediction 91 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01667 Trre-Chr1 12888201 12892791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01667 312 388 C2C2-CO-like Transcription Factor Family AT5G24930 36.585 2.53e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g01667 CCT 5.8e-19 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01667 - - gmx:100807304 478.404