Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01662 ATGTGGCCTGAAGGCGTTCCTTCAAGTATAGCTACGCAGCGGATTCTCTTTTGCCAGTTCAAAACAATGCAAATGATTTACAAAACAATTTACAAAGCTTTATTAGAGGCTGGACTTGAAAATGAGTATGAACCACAAGACTACTTGAACTTTTTTTGCCTTGGCAATCGCGAGCTCTCCGATAATGAAAACACTTCAAAAACTGTAAAACTTACAGGACAAAACACTCCTCAGGTACTCGCTCAAAAGAACAAAAGATTCATGATAGTGGATGATGAATATGTGTTAATGGGATCTGCCAACATAAATCAGAGATCCATGGAAGGCACTAGAGACACTGAGATTGCAATGGGAGCATATCAGCCTAATCATGTGGAGGAGTGA 384 0.3984 MWPEGVPSSIATQRILFCQFKTMQMIYKTIYKALLEAGLENEYEPQDYLNFFCLGNRELSDNENTSKTVKLTGQNTPQVLAQKNKRFMIVDDEYVLMGSANINQRSMEGTRDTEIAMGAYQPNHVEE 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01662 127 PANTHER PHOSPHOLIPASE D 1 125 IPR015679 -
Trre1g01662 127 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 79 106 IPR001736 GO:0003824
Trre1g01662 127 SUPERFAMILY Phospholipase D/nuclease 86 115 - -
Trre1g01662 127 Gene3D Endonuclease Chain A 11 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01662 Trre-Chr1 12852452 12853184 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01662 1 124 Phospholipase D Gene Family (Wang group) AT4G00240 68.939 4.83e-59 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01662 K01115 - gmx:100786241 209.534