Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01661 ATGTTTGTAGTGTTTATGCAGGACTATGGCATTGACTTTGATGACCATGATCAACCTGTCAAACTGTTTCAGTGCAAATGTTGCAGCAAGTTCAGTAGGAATATGAAGCGATCGAACAGTAGGTTCAATTTCTCACTTATAGATAATGTTTATTCTTTAACTTTTATCCCTAAAATAATGGTACCTAGAAAGGAACTTCAACTTGTTGGCATAAGCTCAATGCTTATAGCATCCAGATATGAGGAGTTATTGGCACCAGAGAACTTGGTTTGTGAAAAGAATGTAATGATAGACATGAGCATATATTCTGCATATGTCAAAGCAATCAAAGCAGCACAGAAGTTCATTTATATTGAGAATCAATATTTTCTCGGTTCATCGTATAATTGGGATTTGTACAAAGACCTCGGTGCAAACAACTTAATTTCAATGGAATTGCGCTAA 444 0.3536 MFVVFMQDYGIDFDDHDQPVKLFQCKCCSKFSRNMKRSNSRFNFSLIDNVYSLTFIPKIMVPRKELQLVGISSMLIASRYEELLAPENLVCEKNVMIDMSIYSAYVKAIKAAQKFIYIENQYFLGSSYNWDLYKDLGANNLISMELR 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01661 147 PANTHER PHOSPHOLIPASE D 82 146 IPR015679 -
Trre1g01661 147 Gene3D - 46 87 - -
Trre1g01661 147 Pfam Cyclin, N-terminal domain 57 87 IPR006671 -
Trre1g01661 147 SUPERFAMILY Cyclin-like 55 89 IPR036915 -
Trre1g01661 147 SUPERFAMILY Phospholipase D/nuclease 100 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01661 Trre-Chr1 12850659 12852395 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01661 87 146 Phospholipase D Gene Family (Wang group) AT2G42010 76.667 3.47e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01661 K01115 - gmx:100786241 110.153