Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre1g01648 | ATGGAATTAGAGAGTGTAACTTCAAGTGAAGAAAGTGATGAGCAAGTAGTTCAAGATGAATCTATAGAAACCAAACGTTCTTATGATTGCACATTTTGCAAAAGGGGTTTCACTAATGCAAGGGCATTAGGAGGCCACATGAATATTCATAGAAAAGAGAGAACAAATTATAAAACCAAACAAGGCACACAAAATTCCTCACCTTTTGTTCCAATTGTTTCAAGCCAACCCTCAACATATTATTGCATTTTGGAACCTCCTAGGAACTATGACATGTATCTTCAACCATCAAAAGCTAACCCTTCGCCACCTAGTTTTTTTCAATATGATTTTCTTAACAAAAATTCTCAATCTATGATGGGAACCAATTTGAGTCTCCAAATTGGTTCAAGCCATGAGGCTTCCTTCTCGCCTCAGATCGCTCATCTGCACGCCTCAAATCTTCGATTTCTCTCTTCACACCTCAAATCCCAAATTGCTACTCTTCGCACACACCTCAAATCCCTAATTGATTTCAATTTCCCAATCTCACGGTTTGACTTATGTGGTGTGTAG | 555 | 0.3838 | MELESVTSSEESDEQVVQDESIETKRSYDCTFCKRGFTNARALGGHMNIHRKERTNYKTKQGTQNSSPFVPIVSSQPSTYYCILEPPRNYDMYLQPSKANPSPPSFFQYDFLNKNSQSMMGTNLSLQIGSSHEASFSPQIAHLHASNLRFLSSHLKSQIATLRTHLKSLIDFNFPISRFDLCGV | 184 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre1g01648 | 184 | Gene3D | Classic Zinc Finger | 5 | 70 | - | - | |
Trre1g01648 | 184 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Trre1g01648 | 184 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 28 | 55 | IPR013087 | - | |
Trre1g01648 | 184 | MobiDBLite | consensus disorder prediction | 1 | 17 | - | - | |
Trre1g01648 | 184 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 30 | 50 | IPR013087 | - | |
Trre1g01648 | 184 | SUPERFAMILY | beta-beta-alpha zinc fingers | 25 | 55 | IPR036236 | - | |
Trre1g01648 | 184 | PANTHER | OS07G0101800 PROTEIN | 5 | 154 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre1g01648 | Trre-Chr1 | 12686600 | 12689451 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre1g01648 | 19 | 71 | C2H2 Transcription Factor Family | AT3G09290 | 50.943 | 3.52e-14 | 65.5 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Trre1g01648 | None | None | None |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre1g01648 | - | - | mtr:25483021 | 226.098 |