Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01648 ATGGAATTAGAGAGTGTAACTTCAAGTGAAGAAAGTGATGAGCAAGTAGTTCAAGATGAATCTATAGAAACCAAACGTTCTTATGATTGCACATTTTGCAAAAGGGGTTTCACTAATGCAAGGGCATTAGGAGGCCACATGAATATTCATAGAAAAGAGAGAACAAATTATAAAACCAAACAAGGCACACAAAATTCCTCACCTTTTGTTCCAATTGTTTCAAGCCAACCCTCAACATATTATTGCATTTTGGAACCTCCTAGGAACTATGACATGTATCTTCAACCATCAAAAGCTAACCCTTCGCCACCTAGTTTTTTTCAATATGATTTTCTTAACAAAAATTCTCAATCTATGATGGGAACCAATTTGAGTCTCCAAATTGGTTCAAGCCATGAGGCTTCCTTCTCGCCTCAGATCGCTCATCTGCACGCCTCAAATCTTCGATTTCTCTCTTCACACCTCAAATCCCAAATTGCTACTCTTCGCACACACCTCAAATCCCTAATTGATTTCAATTTCCCAATCTCACGGTTTGACTTATGTGGTGTGTAG 555 0.3838 MELESVTSSEESDEQVVQDESIETKRSYDCTFCKRGFTNARALGGHMNIHRKERTNYKTKQGTQNSSPFVPIVSSQPSTYYCILEPPRNYDMYLQPSKANPSPPSFFQYDFLNKNSQSMMGTNLSLQIGSSHEASFSPQIAHLHASNLRFLSSHLKSQIATLRTHLKSLIDFNFPISRFDLCGV 184
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01648 184 Gene3D Classic Zinc Finger 5 70 - -
Trre1g01648 184 MobiDBLite consensus disorder prediction 1 20 - -
Trre1g01648 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Trre1g01648 184 MobiDBLite consensus disorder prediction 1 17 - -
Trre1g01648 184 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Trre1g01648 184 SUPERFAMILY beta-beta-alpha zinc fingers 25 55 IPR036236 -
Trre1g01648 184 PANTHER OS07G0101800 PROTEIN 5 154 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre1g01648 Trre-Chr1 12686600 12689451 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01648 19 71 C2H2 Transcription Factor Family AT3G09290 50.943 3.52e-14 65.5
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre1g01648 None None None
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01648 - - mtr:25483021 226.098