Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01647 ATGGATTCGTCAGAACAACATTGGCCAAACACATTTAAGAAGCCCGACTTACAGAATTCTCAGCATGGCACCAACTCCTCCGGTGGAGATGGTGGGAGAAGTGCAAAACCAAAGGCAAGATGGTATGCAAATGAAGAGCAACTCCAAATTCTAGAAACCACCTTCAACTCAGGGATGACAAACCCTAAAAGTAAAGACATAAAGAAAATAGTTGCACAGTTACAAGAATTTGGCCCAGTTGGTGTATCTAATGTTTTCTACTGGTTTCAGAATCGTAAGACAAGGAATAAGAATAAACAGAAACAAAGACAACCCTACAATAGGTCTAATAGAAAATCAACAAAAAAATCTCCAACTTCTCATTCTAGTAATTCTATAATCCCAACTCAAAACATCATAGAAGAACCACCTCATTCATCTTCAACATCTTCCTATGATCACCAAAATGTATCTCCTAATGAATTAATGGTACCTAACAATGTTTCAGCTTCTAATGACACAATTTCTTTGAACCAACAAAACCAAGTTGTTTCTGCTCAAACTGATCTTCAGATACCTACAACACCATTTTTCTCTGATGAGCTTCTCAATATGGTTCAGCCTACAATGCCTCAAGAAGTTGTTGATGTGTCTGATTTGCTGAATCATGAGGACTTTATGAATTATTTGACTCAAATTCAAATGAATGACCAATATGATCTTGGAGCTTCAATGAATATGATGCAACAAGAAGAAGATCCACAACTTAGTTTTGGGGTCACATCAAATTTAAGCAATCTTGATTCAACTGATCTTGCTCCTCTTCCTCCCATTACCATTGATGAACCTCTTGTTGATCCATTCTCTATTCCTCAATTTCAAGGTGTTGGTGAGGCTGATGGTGGTGCGGCGAAATGTACAGTGAGTATTAACAACCAGGTATTCGATGTTGATGTGGGACGCTTTAACGTCCGCGAAATCTTTGGAGATGGAGTCGTTCTCACCGACTCCTTCTTCCAACCTGTTCCCATTGACGAGTGGGGTGTAACCCTTGAGCCGCTTCAAAATGGTGCTTCTTATTTCTTGGTACGTATAGAATATGTTCTGTTATAA 1092 0.3883 MDSSEQHWPNTFKKPDLQNSQHGTNSSGGDGGRSAKPKARWYANEEQLQILETTFNSGMTNPKSKDIKKIVAQLQEFGPVGVSNVFYWFQNRKTRNKNKQKQRQPYNRSNRKSTKKSPTSHSSNSIIPTQNIIEEPPHSSSTSSYDHQNVSPNELMVPNNVSASNDTISLNQQNQVVSAQTDLQIPTTPFFSDELLNMVQPTMPQEVVDVSDLLNHEDFMNYLTQIQMNDQYDLGASMNMMQQEEDPQLSFGVTSNLSNLDSTDLAPLPPITIDEPLVDPFSIPQFQGVGEADGGAAKCTVSINNQVFDVDVGRFNVREIFGDGVVLTDSFFQPVPIDEWGVTLEPLQNGASYFLVRIEYVLL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01647 363 MobiDBLite consensus disorder prediction 1 31 - -
Trre1g01647 363 SMART HOX_1 36 103 IPR001356 GO:0003677
Trre1g01647 363 MobiDBLite consensus disorder prediction 93 160 - -
Trre1g01647 363 MobiDBLite consensus disorder prediction 94 110 - -
Trre1g01647 363 CDD homeodomain 37 100 IPR001356 GO:0003677
Trre1g01647 363 ProSiteProfiles 'Homeobox' domain profile. 34 99 IPR001356 GO:0003677
Trre1g01647 363 PANTHER WUSCHEL-RELATED HOMEOBOX 9 1 357 IPR044557 GO:0003700|GO:0050793
Trre1g01647 363 Pfam Homeodomain 38 98 IPR001356 GO:0003677
Trre1g01647 363 MobiDBLite consensus disorder prediction 111 160 - -
Trre1g01647 363 Gene3D - 37 106 - -
Trre1g01647 363 MobiDBLite consensus disorder prediction 1 40 - -
Trre1g01647 363 SUPERFAMILY Homeodomain-like 33 104 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01647 Trre-Chr1 12679491 12681423 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01647 1 356 Wox Gene Family AT5G45980 28.871 1.81e-34 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Trre1g01647 Homeodomain 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01647 - - tpra:123914705 268.085