Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01644 ATGTATAAATCAATAGCATTTGGATTCATAATTTTTCTGCTGCTATTATGTGTATCTGCAACTTCTGATGGATTTCCTAAATGTAACTGTGATGATGACACAAGCTGGTGGACTATCGAGAAGATTCTAGAATGTCAGAAAGTCGGCGATTTCCTAATCGCCGTGGCGTATTTTTCAATTCCTGTTGAGCTAATTTATTTCATCAGTTGTTCAAATTTTCCATTCAAATGGGTACTTTTTCAGTTCATAGCTTTTATTGTACTTTGTGGAATGACACATTTGTTCAATAGTTGGACTTATGGACCTCATACTTTTCAAATCATGGTGACACTTACCGTCTTAAAAGTCCTCACTGCGATGGTTTCGTGTGCAACGGCGATAACCCTCGTTACTTTGATCCCTTTGCTGTTAAAAGTGAAGGTTAGAGAGTTGTTGTTGAAGCGGAAGACGAGGGAGCTTGGTATCGAGTATGGTATGATAATGAAACAGAATGAAGCTGGAATGCATGTAAGAATGCTTACTCAAGAGATTCGTAAGTCGCTTGATAGACATAAGATTCTGTATACGACATTGGTTGAACTGTCGAAAACTTTAGGCTTGCAAAACTGTGCTGTGTGGATGCCTAATGTTGAGAAAACCGCGATGAATCTCACTCATGAATTGAATGGGAGGAATGTTAATTCTTCTATACTTATTACAAATCCGGATGTTGTGAGAGTCAAGGCTGATAATGTAGTTAACATAATTGATTCTGACTCGGAGCTTGCTTCTGCGAGTAGTGGAGTTTCTGTTGAGGCAGGACCGGTTGCTGCGATTCGAATGCCAATGCTTCGGGTTTGTGACTTCAAAGGTGGAACGCCGGAGCTAACGCAAGCGTGTTACGCGATACTTGTATTAGTACTTCCTAGTGAGGAGGCAAGATCTTGGAGCAATCAAGAGTTGGAGATAATTAAAGTTGTTGCTGATCAGGTTGCCGTTGCTCTTTCTCACGCTGCGATTCTCGAAGAATCGCAACTTATTAAAGAGAAACTGGAGGAGCAAAACCGAGCATTGCAACTAGAGAAAATGAACGCTATCATGGCGAGCGAGGCTAGAGCGGTTTTTCAGAAAGTCATGAGCAATGGAATGGGAAGACCAATGCATTCAGTTATGGGTTTGCTTTCAATGATGCAAGATGAGAATTTAAAGAATGAACAGAAACGCATTGTGGACTCGATGGTAAGGACAAGTGGCGTCTTATCAAACTTAATGAACGATGCTATGGACAATTCGGATAGGGATGGTGGAAGCGGAAGATTTCCTTTAGAGATGAAATCTTTTGGTTTACATAATATGCTAAAAGAAGCAGCTTGCATTGCTAAGTGTATGAGTTTATGTAAAGGTTTAGGGTTTAAGGTTGAGGTTGATAAGTCTTTGCCTAACCATGTTATCGGAGACGAAAAGAGGGTTTTTCAAGTGATTTTGCATATGGTTGGAAACCTAATAGATGGTAACCATGGTGGAGGAATTCTTGTGTTTCGAGTGTTTGCGGAATCTGGAAGCCGAGGAAGGACTGAACATGGATATGCAACTTGGAGACCAAGCTCGTCTTGCGGTGATGTGCATATTAAATTTGATGTAAGAATAAATAGCAGTGATTTAGAGTTGGAGACCTCAGTTTCTTCGGGGCAGCTTGCAAGTAGGTTGCGTACTAGTGATCCAACGTTCGAAGAAAAGATGAGCTTCAGCATATGCCAGAAGATAATCCAGTCGATGAAAGGTAACATATGTTCGGTACCGAATGCTAGAGGCTTTCCTCAAGTCATGACTCTTTCTCTTTGGTTTCAATTACGCCGTTCTGTCTCGGTAACCATACCCGAACCAGGGGAGATTTCAGATTTGTCAAGTTCGAATTCATTGTTCAGTGGTCTGCAAGTCTTGTTAGCCGACAATGACGATGTTAATAGGGCAGTGACGCAAAAGTTTCTTCGGAAACTAGGTTGTTCTGTTACATCTGTTTCTTCCGGATACGAATGTCTTAGTCTTGTTGTACATGCTGGTGCATCTCCCTTTGAAGTTGTACTTTTGGATCTTCACTTGCCTGATTTAGATGGATTTGACTTTACTGCGAGGATTCGGAAGTTTAAAAGCCGCAATTGGCCTATCGTCGTTGCTTTGACAGCAAGCTCCGAAGAAGATTTGTGGCAAAAATGTATGCATATTGGATTTAATGGAGTTATCCGAAAGCCAGTTTTGTTGGAAGGATTCGCAGCCGAACTACGAAGAATCTTGAAGGGAAATTTAGCCGTATTAGGATCTTCAAGCTATTAA 2310 0.4108 MYKSIAFGFIIFLLLLCVSATSDGFPKCNCDDDTSWWTIEKILECQKVGDFLIAVAYFSIPVELIYFISCSNFPFKWVLFQFIAFIVLCGMTHLFNSWTYGPHTFQIMVTLTVLKVLTAMVSCATAITLVTLIPLLLKVKVRELLLKRKTRELGIEYGMIMKQNEAGMHVRMLTQEIRKSLDRHKILYTTLVELSKTLGLQNCAVWMPNVEKTAMNLTHELNGRNVNSSILITNPDVVRVKADNVVNIIDSDSELASASSGVSVEAGPVAAIRMPMLRVCDFKGGTPELTQACYAILVLVLPSEEARSWSNQELEIIKVVADQVAVALSHAAILEESQLIKEKLEEQNRALQLEKMNAIMASEARAVFQKVMSNGMGRPMHSVMGLLSMMQDENLKNEQKRIVDSMVRTSGVLSNLMNDAMDNSDRDGGSGRFPLEMKSFGLHNMLKEAACIAKCMSLCKGLGFKVEVDKSLPNHVIGDEKRVFQVILHMVGNLIDGNHGGGILVFRVFAESGSRGRTEHGYATWRPSSSCGDVHIKFDVRINSSDLELETSVSSGQLASRLRTSDPTFEEKMSFSICQKIIQSMKGNICSVPNARGFPQVMTLSLWFQLRRSVSVTIPEPGEISDLSSSNSLFSGLQVLLADNDDVNRAVTQKFLRKLGCSVTSVSSGYECLSLVVHAGASPFEVVLLDLHLPDLDGFDFTARIRKFKSRNWPIVVALTASSEEDLWQKCMHIGFNGVIRKPVLLEGFAAELRRILKGNLAVLGSSSY 769
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01644 769 PIRSF Ethylen_sen_hybr_HK 1 763 IPR014525 GO:0004672|GO:0005789|GO:0009723|GO:0038199|GO:0051740
Trre1g01644 769 Gene3D - 328 427 - -
Trre1g01644 769 SUPERFAMILY CheY-like 634 758 IPR011006 -
Trre1g01644 769 PANTHER TWO-COMPONENT SENSOR HISTIDINE KINASE 25 759 - -
Trre1g01644 769 SMART REC_2 637 753 IPR001789 GO:0000160
Trre1g01644 769 Gene3D - 637 766 - -
Trre1g01644 769 Pfam Response regulator receiver domain 639 745 IPR001789 GO:0000160
Trre1g01644 769 Coils Coil 334 361 - -
Trre1g01644 769 FunFam Ethylene receptor 4 331 425 - -
Trre1g01644 769 CDD HATPase_ETR2_ERS2-EIN4-like 472 606 - -
Trre1g01644 769 Gene3D - 430 608 IPR036890 -
Trre1g01644 769 Gene3D - 172 327 IPR029016 -
Trre1g01644 769 ProSiteProfiles Response regulatory domain profile. 638 757 IPR001789 GO:0000160
Trre1g01644 769 SMART gaf_1 182 338 IPR003018 GO:0005515
Trre1g01644 769 SUPERFAMILY GAF domain-like 185 331 - -
Trre1g01644 769 Pfam GAF domain 182 328 IPR003018 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01644 Trre-Chr1 12663995 12666466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01644 18 758 Miscellaneous Gene Families AT3G04580 52.863 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre1g01644 GAF 1.4e-12 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01644 K14509 - gmx:100802948 1073.54