Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01637 ATGGAACGGTCTGAACAAGAAAATGGAACATTCCAGAAGGTTTTCCGCACAATGGAAAACGACGACGTCGTTTTTAGAAACGGCAATGCAGTTCTTGTCGCAAAGCCACTCACTGTTGTTCGTGCCTTAACAAGCACTGGTGGCGCTCGCGTTCTTGCTACGCCGCCGAATCTGAACCCTAACTCCGATGAGTTTGATTCATGTGAAACTCCGATTATCAAAGTGAAAGACGAGCCTCAAGAATATGAAAAGGCGGTGGCGGCGGTGGCGGTTTCTGAGGAGCGGCGTTCGATGCTGTCGTTTGATGATTTTCTTAAGGCTACGAATACGCAAGTTGCTTCTGTAGATGAATCGTTGAAATCAATGGAAGTTGAATCGATGAAGATGGAAAGTGCTGATGTTGATGTGGTTTGTGAGACGCAAGAGTCGATTAAGGTTGAATCGGTAGATGAATCGCTGAAATCAATGGAAGTTGAACCACCGATTCGAATGGCGGAAGAAGTTACCAATGTTGATGTGGCTTGTGAGACACAGGAATCGGTTAGTGTTGAACCGGTTAAAGAAACAACACCAATTGAACCGGTTGGACCGGTTTGTGCAGAGAAGCAAGCGGTTGGCGATGATGATGATGTGGAAGTTTTGAAGGTAGTGAAAGGGAAACAAGCTGTGAGTGATGAAGTGAAGGTATTGAAGGTGGTGAAGAAGGAAACAGTGGAAGAGAAGAAGATCCTGATTCCAAATCTCGACGATGGTGATTTCCCTGTTGAACCTGGGTGGTCATTGCTTGGAAGCAAGGTTGAGGTTGCAACTTCTATGGCTAAAGGAGTGAGAAGATTGGTGGATAATGAGATTGTTTATTTCGATTTCCCTAATCCACATGCCTCTTATAAGTTTCAATGGATCGTTCGTGTCTCAACCAAACGTTCTGGAGTGGTTGGGAGGTTGCCAATGGAATGGGCAAAATCTGTTATTCCTCTTGTACGATCAGGAAATGTTAAGGTACGAGGCCGATGCGTTGCTGCCTCAGATAAGCTGGAAATGATGCAAGACATCTATTTGTTAGTGAGTTTTTATGTTCATAACTCTCTATTTGCTGAGTGTGTTGATACCTCTTGGAGGTTAGAGGCTTGTGGTAACATTAACTCTGCTGCTTATCCACTCTTTACACTGTTAAATATGCTAGGGATTGAACCATATAGGAAGGCTGATTTCACCCCTGAAGAAATGAAGGCTCGGAAGCGGGTGCTTAAACTTGATTCAGATGAAGCTTTGTCATTTCCTGTCAATAAGCGAAGAAAAGCTGCTGAGCCGCTTCCACAGCCAAGTGAGGATGAACAGGCTCTTTCAGAGTCAGCTTTGAATAAACTTGTTGGAGCTGCAGAAGTCTTTGACCTAGAGGAGAAGGAAGCACCAAAGACCCTAATGTGTAGTCTAAAGCCTTACCAGAGTCAGGCTCTATATTGGATGACAGAAATTGAGAAGGGAGGCGATGATGAAAATGCTGAGAGAAATCTACACCCTTGTTGGTCAGCCTACAATGTATGCCATGGAAGGACAATTTATGTCAACATATTTACTGGAGAGGCAGCAAAGAAATTTCCACAAGCAACACAGATGGCAAGAGGAGGAATTCTGGCGGATGCAATGGGACTTGGAAAAACTGTTATGACAATTGCTTTGATTCTAAGTAATACAGGCAGGATGAGGTCAGAGGACAGTGATGCAGAGAGCATATATGACAACATTTTCTCAACTAAGAGGAGGAATGTTAACCCATATAATGTTGAGGGTGGCACTCTGATTGTTTGTCCCATGGCGTTATTGGGTCAGTGGAAGGATGAACTTGAAACACATTCAAAACCAGGCAGCATATCCATATTTGTTCATTATGGTGGGGGCAGAACCAATAATCCTGATTTGTTGTTAGAGTATGATGTTGTCTTGACTACTTATGGTGTCCTATCCGCTGCATATAAAAGTGAAGGAGAGAATAGCATCTACCACAGAGTCAAGTGGTACAGAGTGGTGCTAGATGAAGCTCATCATATAAAAACCCATAAAAGCCAGGTTGCCCATGCTGCTATTGCTCTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACACCGCTTCAGAATAGCTTAGAAGATCTATACAGTCTCTTGTCTTTCTTGCGTGTTGAACCTTGGTGCAACTGGCAGTGGTGGACTAAGTTGATTCAAAAGCCCTATGAGCAGGGTGATCAAAGAGCCCTGAAATTGGTCAAGGGAATTTTGAGGACATTGATGTTAAGAAGAACCAAGGAAACAAAGGATAAAGAAGGAAGGCCTATACTTGTCCTGCCACCAACTGATATTCAATTGATTGAGTGTGAACAGTCAGAATCTGAACGGGACTTCTATGATGCTCTCTTCCTGCGATCTAAAGTCCAATTTGAGCAGTATGTTGCACAAGGAAAGGTTCTTAACCACTATGCAAATATCCTTGACCTACTAATGCAGTTGAGAAGGTGCTGCAACCATCCATTTTTGGTCATGAGTGGGAGTGATCCTGCAAAATATGCAGACTTGAGCAGACTCGCAAGAAAATTCCTTGAGTCTCATACTGAATCATCTGATATGTGCTGTGAAAGTGGCGCACAGCAAAATGAAGAATTGACCAAACTTGCTAGTACATTTCTACAGAATTCTGCTTCTGCTTCGCACTCTATCCAGTCTCGTGGATACATAGATGAGGTTTTGGGGCATATTCAAAAGGGTGAAACTGTAGAATGCTCTATATGCATGGAATCACCAGATGATCCTGTTTTTACACCTTGTGCACATCAGTTTTGTAGAGAATGCCTATTCAATTGCTGGGGTACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAATCACTCAAGAAAAATGATCTTATTGCTCTTCCAACAGAAAGCCCATTCAAGGTTGATATTGAGAACAATTTGACGGAGTCTTCAAAGCTTTCAAAGCTCTTTGATTTCTTAGAAAAAATTCAGAAGTATTCTGATGAAAAAAGTATTGTTTTTAGTCAATGGACTTCATTTTTCGATCTGTTGGAGAATCCATTGAGGAGGAGAGGGATAGGATTCTTAAGATTTGATGGAAAATTGACTCAGAAGCAGAGAGAAAAAGTTCTTAAAGAATTTAATGACACAAAAGAGAAAAGGGTTTTGTTGATGTCACTAAAGGCTGGTGGTGTGGGCTTGAACTTGACTGCAGCCTCAAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCAGTTGAGGAACAAGCAATAATGAGGATTCATCGTATCGGGCAAAAGCGAAGGGTTACTGTGAGAAGATTCATTGTGAAGGGCACAGTGGAAGATCGGTTGCAACAAGTGCAAGCCAAGAAACAGAAGATGATATCTGGTGCCCTTACTGATGATGAAGTTCGGACTTCCAGGATTCAAGATCTCAAAATGCTATTCTCATAG 3483 0.4266 MERSEQENGTFQKVFRTMENDDVVFRNGNAVLVAKPLTVVRALTSTGGARVLATPPNLNPNSDEFDSCETPIIKVKDEPQEYEKAVAAVAVSEERRSMLSFDDFLKATNTQVASVDESLKSMEVESMKMESADVDVVCETQESIKVESVDESLKSMEVEPPIRMAEEVTNVDVACETQESVSVEPVKETTPIEPVGPVCAEKQAVGDDDDVEVLKVVKGKQAVSDEVKVLKVVKKETVEEKKILIPNLDDGDFPVEPGWSLLGSKVEVATSMAKGVRRLVDNEIVYFDFPNPHASYKFQWIVRVSTKRSGVVGRLPMEWAKSVIPLVRSGNVKVRGRCVAASDKLEMMQDIYLLVSFYVHNSLFAECVDTSWRLEACGNINSAAYPLFTLLNMLGIEPYRKADFTPEEMKARKRVLKLDSDEALSFPVNKRRKAAEPLPQPSEDEQALSESALNKLVGAAEVFDLEEKEAPKTLMCSLKPYQSQALYWMTEIEKGGDDENAERNLHPCWSAYNVCHGRTIYVNIFTGEAAKKFPQATQMARGGILADAMGLGKTVMTIALILSNTGRMRSEDSDAESIYDNIFSTKRRNVNPYNVEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTNNPDLLLEYDVVLTTYGVLSAAYKSEGENSIYHRVKWYRVVLDEAHHIKTHKSQVAHAAIALSSHCRWCLTGTPLQNSLEDLYSLLSFLRVEPWCNWQWWTKLIQKPYEQGDQRALKLVKGILRTLMLRRTKETKDKEGRPILVLPPTDIQLIECEQSESERDFYDALFLRSKVQFEQYVAQGKVLNHYANILDLLMQLRRCCNHPFLVMSGSDPAKYADLSRLARKFLESHTESSDMCCESGAQQNEELTKLASTFLQNSASASHSIQSRGYIDEVLGHIQKGETVECSICMESPDDPVFTPCAHQFCRECLFNCWGTSMGGKCPICRQSLKKNDLIALPTESPFKVDIENNLTESSKLSKLFDFLEKIQKYSDEKSIVFSQWTSFFDLLENPLRRRGIGFLRFDGKLTQKQREKVLKEFNDTKEKRVLLMSLKAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVTVRRFIVKGTVEDRLQQVQAKKQKMISGALTDDEVRTSRIQDLKMLFS 1160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01637 1160 Gene3D - 973 1159 IPR027417 -
Trre1g01637 1160 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 296 1159 - -
Trre1g01637 1160 ProSiteProfiles Zinc finger RING-type profile. 924 964 IPR001841 -
Trre1g01637 1160 FunFam DNA repair protein RAD5B 531 766 - -
Trre1g01637 1160 Pfam Zinc finger, C3HC4 type (RING finger) 922 968 - -
Trre1g01637 1160 SMART ring_2 924 963 IPR001841 -
Trre1g01637 1160 Gene3D - 779 874 IPR027417 -
Trre1g01637 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 463 765 IPR027417 -
Trre1g01637 1160 ProSitePatterns Zinc finger RING-type signature. 939 948 IPR017907 -
Trre1g01637 1160 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 914 972 IPR013083 -
Trre1g01637 1160 CDD DEXDc_SHPRH-like 478 765 - -
Trre1g01637 1160 Pfam Helicase conserved C-terminal domain 994 1107 IPR001650 -
Trre1g01637 1160 SMART HIRAN_2 262 359 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre1g01637 1160 CDD SF2_C_SNF 980 1118 - -
Trre1g01637 1160 Gene3D - 528 766 IPR038718 -
Trre1g01637 1160 CDD RING-HC 923 963 - -
Trre1g01637 1160 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 778 1151 IPR027417 -
Trre1g01637 1160 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 997 1156 IPR001650 -
Trre1g01637 1160 SMART helicmild6 1024 1107 IPR001650 -
Trre1g01637 1160 Pfam HIRAN domain 269 353 IPR014905 GO:0003676|GO:0008270|GO:0016818
Trre1g01637 1160 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 534 727 IPR014001 -
Trre1g01637 1160 SMART ultradead3 474 746 IPR014001 -
Trre1g01637 1160 Pfam SNF2-related domain 481 843 IPR000330 GO:0005524|GO:0140658
Trre1g01637 1160 SUPERFAMILY RING/U-box 920 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01637 Trre-Chr1 12534369 12540281 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01637 176 1159 RAD5 or RAD16-like Gene Family AT5G43530 58.434 0.0 1160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Trre1g01637 SNF2_N 2.9e-82 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01637 K15505 - gmx:100806677 1464.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01637 1 12534369 12540281 Trre1g01637 1 12534369 12540281 ECH