Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01632 ATGGATTCTTATGAATTATTAGAAAACATCGATTCTTTAGATTTTCTTGATTACTCTAATTTCATCGATCCTTCTCCTCCCACAGATTTCCTTTGGTCCAATCCAAGTGTGAGCACGGAAATTGACATTCCATGTGGCGCTGTTGCGTGTCAAGAAGAGAATACTAGGAAGAGGGGACGTGCTGAATCATGCTACAAGTCGGGAACAAAAGCTTGCCGTGAGAAACTGCGGAGGGAAAAGCTCAATGAAAGGTTTTGTGATTTGAGCGCTGTTTTGGAACCCGGAAGACCTGTGAGAACTGATAAACCTGCTATACTTGATGATGCTATCAGAGTCTTGAACCAACTTAAAAGTGAAGCTCAGGAACTGAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTGCGCGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGTTTGAGAAGCAATTGAAAATTATGCCGCCGCCTATTTCACCAGCAGGGTTTATGCCTCCTCATCCTATGGCTGCTTATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTATATTCCAATGTGGCAATATCTTCCTCAGTCGGCTCGCGATACATCCCAAGATCATGAGCTCAGGCCTCCTGCTGCATAG 672 0.4182 MDSYELLENIDSLDFLDYSNFIDPSPPTDFLWSNPSVSTEIDIPCGAVACQEENTRKRGRAESCYKSGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLNQLKSEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKFEKQLKIMPPPISPAGFMPPHPMAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01632 223 Coils Coil 106 161 - -
Trre1g01632 223 Gene3D - 69 149 IPR036638 GO:0046983
Trre1g01632 223 Pfam Helix-loop-helix DNA-binding domain 68 116 IPR011598 GO:0046983
Trre1g01632 223 FunFam Transcription factor bHLH104 68 149 - -
Trre1g01632 223 SMART finulus 71 122 IPR011598 GO:0046983
Trre1g01632 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 60 131 IPR036638 GO:0046983
Trre1g01632 223 CDD bHLH_AtILR3_like 70 145 - -
Trre1g01632 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 65 116 IPR011598 GO:0046983
Trre1g01632 223 PANTHER BHLH TRANSCRIPTION FACTOR 17 223 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01632 Trre-Chr1 12475352 12477804 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01632 46 223 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 69.022 5.43e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g01632 HLH 8.3e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01632 - - mtr:11419849 368.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01632 1 12475352 12477804 Trre1g01632 1 12475352 12477804 ECH