Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01631 ATGGATTCTTATGAATTATTAGAAAACATCGATTCTTTAGATTTTCTTGATTACTCTAATTTCATCGATCCTTCTCCTCCCACAGATTTCCTTTGGTCCAATCCAAGTGCGAGCACGGAAATTGACTTTGCAAGTGTGAGCACGGAAATTGACATTCCATGTGGCGCTGTTGCGTGTCAAGAAGAGAATACTAGGAAGAGGGGACGTGCTGAATCATGCTACAAGTCGGGAACAAAAGCTTGCCGTGAGAAACTGCGGAGGGAAAAGCTCAATGAAAGGTTTTGTGATTTGAGCGCTGTTTTGGAACCCGGAAGACCTGTGAGAACTGATAAACCTGCTATACTTGATGATGCTATCAGAGTCTTGAACCAACTTAAAAGTGAAGCTCAGGAACTGAAAGAAACAAATGAAAAATTATTAGAGGAAATAAAATGTTTAAAGGCAGAGAAAAATGAACTGCGCGAAGAGAAACTTGTTCTGAAAGCTGATAAAGAAAAGTTTGAGAAGCAATTGAAAATTATGCCGCCGCCTATTTCACCAGCAGGGTTTATGCCTCCTCATCCTATGGCTGCTTATCAAGCAGGGGTGAACAAGATGGCTGTTTATCCAAACTATGGCTATATTCCAATGTGGCAATATCTTCCTCAGTCGGCTCGCGATACATCCCAAGATCATGAGCTCAGGCCTCCTGCTGCATAG 699 0.4206 MDSYELLENIDSLDFLDYSNFIDPSPPTDFLWSNPSASTEIDFASVSTEIDIPCGAVACQEENTRKRGRAESCYKSGTKACREKLRREKLNERFCDLSAVLEPGRPVRTDKPAILDDAIRVLNQLKSEAQELKETNEKLLEEIKCLKAEKNELREEKLVLKADKEKFEKQLKIMPPPISPAGFMPPHPMAAYQAGVNKMAVYPNYGYIPMWQYLPQSARDTSQDHELRPPAA 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01631 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 74 125 IPR011598 GO:0046983
Trre1g01631 232 FunFam Transcription factor bHLH104 77 158 - -
Trre1g01631 232 SMART finulus 80 131 IPR011598 GO:0046983
Trre1g01631 232 Pfam Helix-loop-helix DNA-binding domain 77 125 IPR011598 GO:0046983
Trre1g01631 232 CDD bHLH_AtILR3_like 79 154 - -
Trre1g01631 232 Gene3D - 63 158 IPR036638 GO:0046983
Trre1g01631 232 PANTHER BHLH TRANSCRIPTION FACTOR 17 232 IPR044818 GO:0003700|GO:0006355|GO:0006879|GO:0046983
Trre1g01631 232 Coils Coil 115 170 - -
Trre1g01631 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 69 139 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01631 Trre-Chr1 12475352 12477804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01631 55 232 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G14410 69.565 5.13e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre1g01631 HLH 8.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01631 - - mtr:11419849 380.178