Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01629 ATGAATTTTGTAACCAAAAACCACTTGATCCATCATGTGTCACTAGCTCTTTCACCTATTCCAAGTCATCCTAATTCTACAACAAATTTTCCAACCATAGCAATAATTGTAGTAGGAATGATGGCAACATCTTTGTTGCTAATGGCCTACTACACCTTTGTGATTAAATGTTGTCTCAATTCGAACAATATTGATCTTATTATAGCAAGAAGTTTTTCTTTTTCAAGACAACATGAAAATCAATCTTCATCAATCTCAATAGCATCGGAGCCAAGAGGACTAGACCAAGAAGTCATTAATTCAATTCCAATAATTCATTACAAAAGTGAAAAAGAAAATGGTGAAAAAAACTTTAGTAGTGAATGTGCTTTTTGTTTGAGTGAGTTTGAAGAAGATGAGAAACTAAGAGTTATACCAAATTGTAACCATTTATTTCACATTGATTGTGTTGATATTTGGCTTCAAAACAATGCAAATTGTCCACTTTGTAGAAGTAAAGTTTCATTGACAAGAGAAATCCAAGTTGATCAACATGTTCTAACTCCAAGACCTTCACCTTATTTTCAAAGCCAAAATGTTGAAAACATCATTGGTGGTTATGAAGATTTTGTTGTGATTGATTTGGATAATAATGAACATCTTGATGAAGGACAAAACTTGCATGGAATAATAGAAGAAAGAGGTAAAGAATTGGAAGTGTCAAGAGATTCTATTAGTCCTTTACACAAAAAAGCAATTAAGCTTCAAAAAGTGACTAGCATGGGGGATGAGGGTATAATTGGTTTTAAAGACAAATTTGATGGTTTCTTAGTTCAACCAATTAGAAGGTCTTTCTCAATGGACTTATCCATTGAAGTTTGTGGTGATAGTAGTAGAAGGGTAAATAGGTCATTCTTTCCATTTGGACATGGAAGTATATCAAGAAGTTCTGTTTTACCTATTCAATTGGAACCTTAA 957 0.325 MNFVTKNHLIHHVSLALSPIPSHPNSTTNFPTIAIIVVGMMATSLLLMAYYTFVIKCCLNSNNIDLIIARSFSFSRQHENQSSSISIASEPRGLDQEVINSIPIIHYKSEKENGEKNFSSECAFCLSEFEEDEKLRVIPNCNHLFHIDCVDIWLQNNANCPLCRSKVSLTREIQVDQHVLTPRPSPYFQSQNVENIIGGYEDFVVIDLDNNEHLDEGQNLHGIIEERGKELEVSRDSISPLHKKAIKLQKVTSMGDEGIIGFKDKFDGFLVQPIRRSFSMDLSIEVCGDSSRRVNRSFFPFGHGSISRSSVLPIQLEP 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01629 318 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 78 169 IPR013083 -
Trre1g01629 318 SMART ring_2 122 163 IPR001841 -
Trre1g01629 318 SUPERFAMILY RING/U-box 98 173 - -
Trre1g01629 318 ProSiteProfiles Zinc finger RING-type profile. 122 164 IPR001841 -
Trre1g01629 318 PANTHER RING-H2 FINGER PROTEIN ATL16 15 314 IPR044600 GO:0016567|GO:0016740
Trre1g01629 318 CDD RING-H2_EL5-like 121 164 - -
Trre1g01629 318 Pfam Ring finger domain 121 164 IPR001841 -
Trre1g01629 318 FunFam E3 ubiquitin-protein ligase ATL6 82 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01629 Trre-Chr1 12457449 12458405 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01629 21 318 C3H Transcription Factor Family AT1G04360 40.556 3.08e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01629 - - psat:127097049 379.407