Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01620 ATGGATTGTTCCTTCATACCCTTTTCATCAAAATCAAATTTTTTTCCACAATTTTCATTTGGGTCACAAGATTCAATCTCATTGAATCCAAAGAATCACCATGAGTTTCTTCCCTTCAATGAAAATGACCCAGAAGAGATGCTTCTATATGGCATGATAACATCATCATCATCATCATCATTACAACAAAGTAGCAAACAAACAACAACAACAACAACAAACAACAATAAAGAGAAAAACAACAAATCCTACCGAGGCGTGCGAAGGCGACCGTGGGGGAAATTCGCGGCCGAAATAAGGGATTCGACAAGACATGGAATAAGGGTTTGGCTTGGAACATTTGATAGTGCTGAAGCAGCAGCATTAGCTTATGATCAAGCTGCTTTTTCAATGAGAGGTTCATCTGCAACACTTAATTTTTCAGTTGAAAAGGTTAAGGAATCACTTAGAGACATGAATTATGTGTTGTCTAATGATGGTGAATGTTCCCCTGTTATTGCTTTGAAGAGAAAACATTCAATGAGACGTAAAATGGATGAAAAGAAGAAGAAACATGACACAGATGTTAGGATTGATAATTTGGTTGTGTTTGAAGATCTTGGTGCTGAATATTTGGAACAATTGTTGATGTCTTCTGATGATAATTAA 648 0.3627 MDCSFIPFSSKSNFFPQFSFGSQDSISLNPKNHHEFLPFNENDPEEMLLYGMITSSSSSSLQQSSKQTTTTTTNNNKEKNNKSYRGVRRRPWGKFAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSSATLNFSVEKVKESLRDMNYVLSNDGECSPVIALKRKHSMRRKMDEKKKKHDTDVRIDNLVVFEDLGAEYLEQLLMSSDDN 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01620 215 SUPERFAMILY DNA-binding domain 83 142 IPR016177 GO:0003677
Trre1g01620 215 Pfam AP2 domain 83 133 IPR001471 GO:0003700|GO:0006355
Trre1g01620 215 MobiDBLite consensus disorder prediction 58 87 - -
Trre1g01620 215 PRINTS Ethylene responsive element binding protein signature 84 95 IPR001471 GO:0003700|GO:0006355
Trre1g01620 215 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Trre1g01620 215 ProSiteProfiles AP2/ERF domain profile. 83 141 IPR001471 GO:0003700|GO:0006355
Trre1g01620 215 MobiDBLite consensus disorder prediction 58 80 - -
Trre1g01620 215 FunFam Ethylene-responsive transcription factor 2 82 143 - -
Trre1g01620 215 CDD AP2 84 140 IPR001471 GO:0003700|GO:0006355
Trre1g01620 215 PANTHER DNA-BINDING DOMAIN 55 210 IPR044808 GO:0003700|GO:0009873
Trre1g01620 215 Gene3D AP2/ERF domain 82 143 IPR036955 GO:0003700|GO:0006355
Trre1g01620 215 SMART rav1_2 83 147 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01620 Trre-Chr1 12417847 12418494 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01620 5 215 AP2-EREBP Transcription Factor Family AT3G23240 58.796 8.53e-80 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre1g01620 AP2 7.5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01620 K14516 - jre:109007057 237.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre13g03956 13 47777399 47778043 Trre1g01620 1 12417847 12418494 PCT