Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01614 ATGGTTAGAGCTCCTTGTTGTGAAAAGGAAGGATTGAAGAAGGGTCCTTGGACTTCAGAAGAAGATGAAATCCTTACATCTTACATCCAAAAACATGGGCATAGCAATTGGCGTGCCCTCCCAAAACATGCCGGCTTATTAAGATGTGGAAAGAGTTGTAGATTGAGATGGATTAACTATTTAAAACCAGATATTAAGAGAGGAAATTTCACAAATGAAGAAGAAGATATTATCATTAAGATGCATGAATTGCTTGGGAACAGGTGGTCAGCAATAGCAGCAAAATTACCTGGAAGAACCGACAATGAAATAAAAAATGTGTGGCACACACATTTGAAGAAGAGATTAATCAAAACCAATAATAATCAACCAAATTCAAATACCAAAAAAAGAGCATCAAAATCAAAAATCAAAAGAACTGATTCCAATTCAAGCACTATAATTCAATCACATGAACCTTATAATAATAGTCCTAATAATTATTTCATTGAAATGGAAACTACATCATCAAATTCCAATTTTTCTAGTGATTTTTCATCACAAGGAAAAAATATTGACAATAGTATCAATAATTTTGAAGACCCTGAAGACTCATTTGTGACAATGCTTGAAATTGATGAAAGTTTTTGGTCAGAGACAGTAACTGATGATGAAATTAGTTCAACCATGCCATCAAATTCTTCTATGACAATTATTTCAAATGAATTGCCAAATCAGCAATACCCTATTGATAATTCAGTAGAAAATTTCCAAAAATCCTTTGATGATGATGATGATGGTATGGATTTTTGGTATGATCTCTTCATTAGATCAGGGGAATCAACAGAATTGCCAGAGTTTTAG 843 0.3274 MVRAPCCEKEGLKKGPWTSEEDEILTSYIQKHGHSNWRALPKHAGLLRCGKSCRLRWINYLKPDIKRGNFTNEEEDIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLIKTNNNQPNSNTKKRASKSKIKRTDSNSSTIIQSHEPYNNSPNNYFIEMETTSSNSNFSSDFSSQGKNIDNSINNFEDPEDSFVTMLEIDESFWSETVTDDEISSTMPSNSSMTIISNELPNQQYPIDNSVENFQKSFDDDDDGMDFWYDLFIRSGESTELPEF 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01614 280 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 219 - -
Trre1g01614 280 CDD SANT 69 112 IPR001005 -
Trre1g01614 280 MobiDBLite consensus disorder prediction 115 159 - -
Trre1g01614 280 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Trre1g01614 280 SMART sant 13 63 IPR001005 -
Trre1g01614 280 SMART sant 66 114 IPR001005 -
Trre1g01614 280 CDD SANT 16 61 IPR001005 -
Trre1g01614 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Trre1g01614 280 Gene3D - 13 66 - -
Trre1g01614 280 MobiDBLite consensus disorder prediction 139 159 - -
Trre1g01614 280 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Trre1g01614 280 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Trre1g01614 280 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Trre1g01614 280 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Trre1g01614 280 Gene3D - 68 144 - -
Trre1g01614 280 FunFam Myb transcription factor 11 67 - -
Trre1g01614 280 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01614 Trre-Chr1 12346839 12348466 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01614 1 280 MYB Transcription Factor Family AT2G31180 47.038 1.68e-76 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre1g01614 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01614 K09422 - gmx:100806975 340.887