Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre1g01611 ATGGCAGATCCTGATACATATGGGAATCCTGAACGTGATATTGAACAAGCATTCATTACTTTGAAAAGAGGAACTCAGTTGGTTAAGTATTGTCGAAAAGGGAAGCCAAAACTTTGTAATTTCAGGCTTTCACAGGATGAAACATCACTGATTTGGATTTCTCATGGAAAGGAAAAGCATCTGAAGTTGTCTTCTGTTTTGCGCATCATCTCGGGACAGAGAACAGCTGTCTTTAGAAGATTTTTGCGCCCTGAAAAGGATTATCTATCATTTTCACTTATTTATAAAAAAGGCGAAAGATCACTTGATCTGATCTGCAAGGATACAGCTGAAGTTGAGGTATGGCTTTCGGGCCTTAAGGAATTAATTTCTACCGGACAGCATAGAAAGCGGAGCTCTTCAAGTGAATTGACAGATGATAGCATTGACTGTTCTTCGATTGATCGTCCTTTTGGTGGAGCACTAGAGTTTACTTCAAGCATTTCCAAGGGCAGGTTTTCTTTTGAATCAGCTTATCGTGAATCCTCATCGCATAGAAGACGATCAGATGCGGGGTCAGATAATGCAAGTATGCCAGTAAGGACAAGTGGTGTTGGAGATGGTTCTCGTGTTAGTGTGTCAAGTGTTAGCTATGCTAGTAGTGTAGCATCGGGGCCCGATGACATAGAGTCTCTAGGTGATGTTTTCATATGGGGAGAGGTTTGGGTCGACGGGAATCCCTCTGATGGGTCAGGGAGTCAAGTCCCCTCCAAGACAGATGTTCTTATTCCTAAGCCATTAGAGTCTGATGTTGTTCTCGATGTTCAACAGATAGAACCCGGTGTAAGTCACATTGCTCTAGTAACACGGCAAGGAGAGGTTTTTACCTGGGGAGAGGACTCTGACGGGAGACTTGGACATGGATTCGATAAGGATTTTGGTAAACCACGTCTTGTTGAGTCCATAGCGGTTACTAATATGAGTTTTGTTGCCTGTGGTGAATATCATACATGTGCTGTAGCTACATCTGGAGATCTATACACATGGGGTGACGGTACACATAATGCGGGAATTCTAGGTCATGGAACCGATGTTAGCCATTGTATTCCGAAGAGGGTCACTGGCCTTTTAGAAGGACTTCAGGTTATATCTATAGCATGTGGATCATGGCATACAGCATTGATAACCTCCAATGGGAAACTTTTTACCTTTGGAGATGGAATGCTCGGTGTCTTGGGGCATGGAAATAGAGAGAGTGTTTCATATCCAAAGGAGGTAGAGTTAACGAGTGGACACAAGCCTATTAAGGTTGCATGTGGAGTGTGGCACACTGCAGCCATTATAGAGGTTAATGATCAATCAGGTTCAAATGCTTCTGCATCAAAGAGGCTATTCACATGGGGTGATGGCGATCAATATCGTTTAGGTCATGCTAACAAGGAAACATATCTTCAACCGACATGTGTGGCTGCACTTACTGAATATAATTTTCAACAGGTTGCATGTGGACAAAATTTCACTGTTGCACTAACCGAATCTGGTCATGTTTTTACTGTGGGAAGCACAGCATACGGTCAACTAGGAAATCCAAACTCCGATGGAAAAGTACCAATTCTAGTAAGAGATAAATTACAAGGTGAATCTGTTGAAGAAATATCATGCGGCACACATCATGTTGCTGCATTGACTTCAAAAAGTGAACTATATACTTGGGGGAGAGGTGCGAATGGAAGATTAGGACATGGAGACACAGTCGATCAGAAAACTCCAACGTTGGTGGAAGCCTTGAAAGAAAGGCATGTAAAGAATATCGCATGCGGTGCAAATTTTACAACTTGTATATGCATACATAAATGGGTTTCTGGGAATGACCAATCGGTTTGCTCCGGTTGTAGACAACCTTTTGGTTTTACTAGAAAAAGGCATAATTGTTATCATTGTGGATTGGTCTATTGTCATCCTTGTAGTTCGAAAAAGGCGTTGAAAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGCGTATGTGATGCTTGTCACGCAAAGCTTAAAGGTTCTGATAGTCTTAACGCTTACAATTATAATAGAGAAATTAGTCGTCCAGTAAGTACCTCATATGGAAGATATGACAGAGGAGAGGTAAGGCCTTCAAGAATTCTCTTGACTTCTTCTGCCACAGGTCTAGTGAAATACCTTGACTTAAGGAGTAATATGCATGGAAGTACACACGAATCTTCTTCCATTGGAAGAGATGCTCAAACTCAGTTGCGTTTGCAATTGAAAGATGTCGTATTTCCAGGTTCATCAAGTTCCACACAGAATGCTTCCAGGCCTCTTGTTATGCCGCAAAGTCAACCACCAACTGCACCTTCATCAGCTACTTCAAGACCAACCTCACCATATTCAAGAAGACCACCTAGCCCGACACGTTCTATTTCCCCTGGATTTTCAAGAAGCATTATTGATAACTTAAAGAAGAAAAATGAGCTTTTGAATCAAGAAGTATCGAAGTTGCAAAACCATATTCGAAGTTTAAAGCAAAAGGGTGACATGCAAGATATGAAGATTCACGAGCTTCAGAAAAATATCGAGGAAGCAAATCTATTGGCTGGAGAGGAATCTTCTAAGCATAGAGAAGCAAGGGATTTCATCAAGTCTATGGCAGATGAGTTGAGGGAAGTGACTGAAAAGTTGCCACCAGAGATTCCTGGCAGTGAAACCTTGAAAGAGATCCATGCTCAAGCGCAATATATTCTGAAAGAAAATTTAGAATTTGAATCTTCTTCATTCCAATCGGGCTTCGAGTCTGAAAAACAACCTGCACATGATATACCAGCATCAGATAGCAACTCTTCAAAACTGCAAGAGCTAAGATCAGAAGGAAATGATGAAACTTCTGAGGCTGTTCCATCTATAGATGGAGGAAATGTTCATCACAAAAGCAGAAGCTCGTCTTTATCGAGTATAGAAGCGTCTACACCAAGTTCAAAAAATCGTTCCAGATCACCTGAATCTCACAATTCTATGAGCGAAGGAGAAACATCCATCATTGAACAATTTGAACATGGTGTCTATGTCACGGTCGGTGTACTAGCTGATGGCGTCAAAGTTTTCAAACGTGTTAGATTCAGTAAGAGAAGATTCAATGAGCAACAAGCAGAAGAATGGTGGAACAATAACAAAGATAGGTTGCATAGGAGATACAGTCTACCACCTATACAGAATGAAATTACTGGTTCATCTACCACCTCACCCCATGCTGAAGAAAATGGTGAGGCATCACATTCTTAA 3270 0.4153 MADPDTYGNPERDIEQAFITLKRGTQLVKYCRKGKPKLCNFRLSQDETSLIWISHGKEKHLKLSSVLRIISGQRTAVFRRFLRPEKDYLSFSLIYKKGERSLDLICKDTAEVEVWLSGLKELISTGQHRKRSSSSELTDDSIDCSSIDRPFGGALEFTSSISKGRFSFESAYRESSSHRRRSDAGSDNASMPVRTSGVGDGSRVSVSSVSYASSVASGPDDIESLGDVFIWGEVWVDGNPSDGSGSQVPSKTDVLIPKPLESDVVLDVQQIEPGVSHIALVTRQGEVFTWGEDSDGRLGHGFDKDFGKPRLVESIAVTNMSFVACGEYHTCAVATSGDLYTWGDGTHNAGILGHGTDVSHCIPKRVTGLLEGLQVISIACGSWHTALITSNGKLFTFGDGMLGVLGHGNRESVSYPKEVELTSGHKPIKVACGVWHTAAIIEVNDQSGSNASASKRLFTWGDGDQYRLGHANKETYLQPTCVAALTEYNFQQVACGQNFTVALTESGHVFTVGSTAYGQLGNPNSDGKVPILVRDKLQGESVEEISCGTHHVAALTSKSELYTWGRGANGRLGHGDTVDQKTPTLVEALKERHVKNIACGANFTTCICIHKWVSGNDQSVCSGCRQPFGFTRKRHNCYHCGLVYCHPCSSKKALKAALAPTPSKPHRVCDACHAKLKGSDSLNAYNYNREISRPVSTSYGRYDRGEVRPSRILLTSSATGLVKYLDLRSNMHGSTHESSSIGRDAQTQLRLQLKDVVFPGSSSSTQNASRPLVMPQSQPPTAPSSATSRPTSPYSRRPPSPTRSISPGFSRSIIDNLKKKNELLNQEVSKLQNHIRSLKQKGDMQDMKIHELQKNIEEANLLAGEESSKHREARDFIKSMADELREVTEKLPPEIPGSETLKEIHAQAQYILKENLEFESSSFQSGFESEKQPAHDIPASDSNSSKLQELRSEGNDETSEAVPSIDGGNVHHKSRSSSLSSIEASTPSSKNRSRSPESHNSMSEGETSIIEQFEHGVYVTVGVLADGVKVFKRVRFSKRRFNEQQAEEWWNNNKDRLHRRYSLPPIQNEITGSSTTSPHAEENGEASHS 1089
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre1g01611 1089 SMART fyve_4 609 678 IPR000306 GO:0046872
Trre1g01611 1089 Coils Coil 849 869 - -
Trre1g01611 1089 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 625 682 IPR013083 -
Trre1g01611 1089 SUPERFAMILY PH domain-like 14 123 - -
Trre1g01611 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 285 336 IPR000408 -
Trre1g01611 1089 Gene3D - 13 132 IPR011993 -
Trre1g01611 1089 SUPERFAMILY RCC1/BLIP-II 226 612 IPR009091 -
Trre1g01611 1089 Pfam Transcription factor regulating root and shoot growth via Pin3 1008 1061 IPR013591 -
Trre1g01611 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 337 391 IPR000408 -
Trre1g01611 1089 MobiDBLite consensus disorder prediction 1062 1089 - -
Trre1g01611 1089 FunFam PH, RCC1 and FYVE domains-containing protein 1 196 444 - -
Trre1g01611 1089 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 57 878 - -
Trre1g01611 1089 Gene3D - 185 450 IPR009091 -
Trre1g01611 1089 Gene3D - 451 624 IPR009091 -
Trre1g01611 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 392 443 IPR000408 -
Trre1g01611 1089 ProSiteProfiles BRX domain profile. 1007 1062 IPR013591 -
Trre1g01611 1089 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Trre1g01611 1089 MobiDBLite consensus disorder prediction 188 203 - -
Trre1g01611 1089 CDD PH_PLC_plant-like 12 124 - -
Trre1g01611 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 559 610 IPR000408 -
Trre1g01611 1089 MobiDBLite consensus disorder prediction 177 203 - -
Trre1g01611 1089 SUPERFAMILY FYVE/PHD zinc finger 611 682 IPR011011 -
Trre1g01611 1089 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 615 677 IPR017455 -
Trre1g01611 1089 PRINTS Chromosome condensation regulator RCC1 signature 496 514 IPR000408 -
Trre1g01611 1089 PRINTS Chromosome condensation regulator RCC1 signature 554 575 IPR000408 -
Trre1g01611 1089 PRINTS Chromosome condensation regulator RCC1 signature 378 394 IPR000408 -
Trre1g01611 1089 PRINTS Chromosome condensation regulator RCC1 signature 394 408 IPR000408 -
Trre1g01611 1089 PRINTS Chromosome condensation regulator RCC1 signature 337 353 IPR000408 -
Trre1g01611 1089 PRINTS Chromosome condensation regulator RCC1 signature 287 303 IPR000408 -
Trre1g01611 1089 MobiDBLite consensus disorder prediction 759 810 - -
Trre1g01611 1089 Coils Coil 814 841 - -
Trre1g01611 1089 MobiDBLite consensus disorder prediction 970 1005 - -
Trre1g01611 1089 Pfam FYVE zinc finger 611 676 IPR000306 GO:0046872
Trre1g01611 1089 MobiDBLite consensus disorder prediction 923 1005 - -
Trre1g01611 1089 Pfam Transcription factor BRX N-terminal domain 865 895 IPR027988 -
Trre1g01611 1089 CDD FYVE_like_SF 621 673 - -
Trre1g01611 1089 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 378 388 IPR000408 -
Trre1g01611 1089 MobiDBLite consensus disorder prediction 1066 1082 - -
Trre1g01611 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 456 503 IPR000408 -
Trre1g01611 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 285 333 IPR000408 -
Trre1g01611 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 506 555 IPR000408 -
Trre1g01611 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 560 607 IPR000408 -
Trre1g01611 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 391 440 IPR000408 -
Trre1g01611 1089 Pfam Regulator of chromosome condensation (RCC1) repeat 336 388 IPR000408 -
Trre1g01611 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 507 558 IPR000408 -
Trre1g01611 1089 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 455 506 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre1g01611 Trre-Chr1 12324286 12330346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre1g01611 1004 1063 Major Intrinsic Protein MIP AT1G31880 35.000 9.45e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre1g01611 - - mtr:11430388 1500.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre1g01611 1 12324286 12330346 Trre1g01611 1 12324286 12330346 ECH